View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3119_low_26 (Length: 236)

Name: NF3119_low_26
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3119_low_26
NF3119_low_26
[»] chr8 (3 HSPs)
chr8 (15-220)||(23276014-23276219)
chr8 (15-220)||(23401793-23401997)
chr8 (36-98)||(7852697-7852759)
[»] chr3 (3 HSPs)
chr3 (19-145)||(6582659-6582785)
chr3 (16-145)||(601433-601562)
chr3 (19-128)||(42968116-42968225)
[»] scaffold0025 (1 HSPs)
scaffold0025 (19-143)||(62245-62369)
[»] chr6 (1 HSPs)
chr6 (19-130)||(29945591-29945702)
[»] chr7 (1 HSPs)
chr7 (15-98)||(46434374-46434457)
[»] chr2 (1 HSPs)
chr2 (19-101)||(10784723-10784805)
[»] chr4 (1 HSPs)
chr4 (19-89)||(5875289-5875359)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 23276014 - 23276219
Alignment:
Q  15 gacaccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatcgaatttaggatttgca 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23276014 gacaccatgtttaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatcgaatttaggatttgca 23276113  T
Q  115 ggctgaaggaacgatgttgattcggtcattgcagtgaagaacagatgaagaaatggatcggattgagaggtagaagatgaagataaccgtcgccgccgta 214  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23276114 ggctgaagaaacgatgttgattcggtcattgcagtgaagaacagatgaagaaatggatcggattgagaggtagaagatgaagataaccgtcgccgccgta 23276213  T
Q  215 actaac 220  Q
    ||||||    
T  23276214 actaac 23276219  T

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Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 23401997 - 23401793
Alignment:
Q  15 gacaccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatcgaatttaggatttgca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23401997 gacaccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatcgaatttaggatttgca 23401898  T
Q  115 ggctgaaggaacgatgttgattcggtcattgcagtgaagaacagatgaagaaatggatcggattgagaggtagaagatgaagataaccgtcgccgccgta 214  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || ||    
T  23401897 ggctgaaggaacgatgttgattctgtcattgcagtgaagaacagatgaag-aatggatcggattgagaggtagaagatgaagataaccgtagcctccata 23401799  T
Q  215 actaac 220  Q
    ||||||    
T  23401798 actaac 23401793  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 7852697 - 7852759
Alignment:
Q  36 ccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatc 98  Q
    ||||||||||||  ||| ||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  7852697 ccaatattctttagagcgaagaagattctccattaacatggaccagtgatcatagaatccatc 7852759  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 6582659 - 6582785
Alignment:
Q  19 ccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatcgaatttaggatttgcaggct 118  Q
    |||| ||||||||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||  |||||||||||||| |||||| ||||||| |    
T  6582659 ccatattcaataagattccaatattctttggagcgaagaagattctccattaacatagaccaatgattgtagaaaccatcgaacttaggaattgcaggtt 6582758  T
Q  119 gaaggaacgatgttgattcggtcattg 145  Q
    |||| ||||| | |||||  |||||||    
T  6582759 gaagaaacgaggatgatttagtcattg 6582785  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 601562 - 601433
Alignment:
Q  16 acaccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatcgaatttaggatttgcag 115  Q
    |||||||||||||| || |||||||| |||||| | | ||||||||||||||| ||||| ||||||||||| || |||||||||||  | ||| ||||||    
T  601562 acaccatgttcaatgagattccaatactctttggaacgaagaagattctccattaacatagaccaatgatcgtaaaaaccatcgaacctgggaattgcag 601463  T
Q  116 gctgaaggaacgatgttgattcggtcattg 145  Q
    | |||||||| || | |||||| |||||||    
T  601462 gttgaaggaatgaggatgattccgtcattg 601433  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 42968225 - 42968116
Alignment:
Q  19 ccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatcgaatttaggatttgcaggct 118  Q
    |||||||| ||||| ||||| ||||||||| | |  |||||||||||||||||||| ||||||||||| |||||||| |||||||| ||| ||||||| |    
T  42968225 ccatgttcgataagattccagtattctttggaacggagaagattctccatcaacatggaccaatgatcgtagaaaccgtcgaattttggaattgcaggtt 42968126  T
Q  119 gaaggaacga 128  Q
    |||| |||||    
T  42968125 gaagaaacga 42968116  T

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Target: scaffold0025 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 62245 - 62369
Alignment:
Q  19 ccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatcgaatttaggatttgcaggct 118  Q
    ||||||||||| || ||||||||||||||| | | |||||| || ||||||||||| |||||||||||||||||||||||  |||| ||  ||||||| |    
T  62245 ccatgttcaatcaggttccaatattctttgaaacgaagaaggttttccatcaacatggaccaatgatcatagaaaccatcatattttggtgttgcaggtt 62344  T
Q  119 gaaggaacgatgttgattcggtcat 143  Q
    |||| |||||||  ||||| |||||    
T  62345 gaagaaacgatgaagattctgtcat 62369  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 29945591 - 29945702
Alignment:
Q  19 ccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatcgaatttaggatttgcaggct 118  Q
    ||||||||||| || | |||||| |||||| | | ||| ||||| ||||| ||||| |||||||||||||||||||| ||||| || ||  ||||||| |    
T  29945591 ccatgttcaatcaggtgccaatactctttggaacgaaggagattttccattaacatggaccaatgatcatagaaaccttcgaactttggtattgcaggtt 29945690  T
Q  119 gaaggaacgatg 130  Q
    |||| |||||||    
T  29945691 gaagaaacgatg 29945702  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 46434374 - 46434457
Alignment:
Q  15 gacaccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatc 98  Q
    ||||||||  || ||||| | ||| ||||||||| | | ||||||||||||||| ||||| ||||| |||||||||||||||||    
T  46434374 gacaccattctctataagatgccagtattctttggaacgaagaagattctccattaacatagaccagtgatcatagaaaccatc 46434457  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 10784723 - 10784805
Alignment:
Q  19 ccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcatagaaaccatcgaa 101  Q
    ||||||||||| || | |||||| |||||| | | ||  ||||| ||||| ||||| ||||||||||||||||||||||||||    
T  10784723 ccatgttcaatcaggtgccaatactctttggaacgaaagagattttccattaacatagaccaatgatcatagaaaccatcgaa 10784805  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 5875359 - 5875289
Alignment:
Q  19 ccatgttcaataagtttccaatattctttgcagcaaagaagattctccatcaacattgaccaatgatcata 89  Q
    |||| |||||| || ||||||||||||||  ||| ||||| ||| ||||||||||||  ||||||||||||    
T  5875359 ccattttcaatgagattccaatattctttcgagcgaagaaaattttccatcaacattttccaatgatcata 5875289  T

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