View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3119_low_33 (Length: 207)
Name: NF3119_low_33
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 742895 - 742709
Alignment:
| Q |
1 |
aattggcgaaaatgagaaagaaaggtttcttggaattggtgacaggttgcacaatagagttgtgggacaagatcaagcagtaaatgacgttgctaacgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
742895 |
aattggcgaaaatgagaaagaaaggtttcttggaattggtgacaggttgcataatagagttgtgggacaagatcaagcagtaaatgacgttgctaacgct |
742796 |
T |
|
| Q |
101 |
gtattaattaaggtggagagctggtttaggaagacctcaacatccaattggttccttcctattccttagtccaactggtgttggtaaaaca |
191 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
742795 |
gta----ttaaggtggagagctggttcaggaagacctcaacatccaattggttccttcctattccttggtccaactggtgttggtaaaaca |
742709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 42450144 - 42449965
Alignment:
| Q |
8 |
gaaaatgagaaagaaaggtttcttggaattggtgacaggttgcacaatagagttgtgggacaagatcaagcagtaaatgacgttgctaacgctgtattaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||| |||||||||| |||||||||| ||||||| | |
|
|
| T |
42450144 |
gaaaatgagaaagaaaggtttcttggacttggtgacaggttacacaaaagagtagtgggacaagatcatgcagtaaatgccgttgctaacactgtattga |
42450045 |
T |
|
| Q |
108 |
ttaaggtggagagctggtttaggaagacctcaacatccaattggttccttcctattccttagtccaactggtgttggtaaaaca |
191 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42450044 |
----ggcggagagttggtttaggaagacctcaacatccaattggttccttcctattccttggtccaactggtgttggtaaaaca |
42449965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 10045891 - 10046069
Alignment:
| Q |
9 |
aaaatgagaaagaaaggtttcttggaattggtgacaggttgcacaatagagttgtgggacaagatcaagcagtaaatgacgttgctaacgctgtattaat |
108 |
Q |
| |
|
||||||| ||||||||||| ||||| |||| ||||| ||||| | |||||||||||||||||| |||||||| || | || ||| |||||| ||| |
|
|
| T |
10045891 |
aaaatgataaagaaaggttggttggacttggagacagattgcatactagagttgtgggacaagaccaagcagttaaagctgtcgctggggctgtagtaa- |
10045989 |
T |
|
| Q |
109 |
taaggtggagagctggtttaggaagacctcaacatccaattggttccttcctattccttagtccaactggtgttggtaaaaca |
191 |
Q |
| |
|
||| |||||||||| |||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
10045990 |
---ggtcgagagctggtctaggaagaccacaacaaccaactggttccttcctattccttggtccaactggtgtcggtaaaaca |
10046069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 38707683 - 38707861
Alignment:
| Q |
9 |
aaaatgagaaagaaaggtttcttggaattggtgacaggttgcacaatagagttgtgggacaagatcaagcagtaaatgacgttgctaacgctgtattaat |
108 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| |||||||| || | ||||| ||||| | |
|
|
| T |
38707683 |
aaaatgataaagaaaggttggttggacttggtgacaaattgcacagtagagttgtgggacaagaccaagcagttaaagtttttgctggggctgt----ag |
38707778 |
T |
|
| Q |
109 |
taaggtggagagctggtttaggaagacctcaacatccaattggttccttcctattccttagtccaactggtgttggtaaaaca |
191 |
Q |
| |
|
| || | ||||| ||||||| ||||||||||| | |||| |||| |||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
38707779 |
tgagatcgagagttggtttaagaagacctcaaaaaccaactggtcccttcctattccttggtccaaatagtgttggtaaaaca |
38707861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 45467744 - 45467921
Alignment:
| Q |
9 |
aaaatgagaaagaaaggtttcttggaattggtgacaggttgcacaatagagttgtgggacaagatcaagcagtaaatgacgttgctaacgctgtattaat |
108 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||| |||||| |||||| ||||||||||| ||||| || |||| |||||| | |||||||| | |
|
|
| T |
45467744 |
aaaatgagaaagcaaggttggttggacttggtgacagactgcacactagagtcgtgggacaagaccaagcggttaatgctgttgctgaggctgtattga- |
45467842 |
T |
|
| Q |
109 |
taaggtggagagctggtttaggaagacctcaacatccaattggttccttcctattccttagtccaactggtgttggtaaaac |
190 |
Q |
| |
|
| | |||||||||||||||||||| ||||| |||| |||||||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
45467843 |
---gatcaagagctggtttaggaagaccccaacaaccaactggttccttcttattccttggtccgactggtgttggtaaaac |
45467921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 43064813 - 43064740
Alignment:
| Q |
117 |
agagctggtttaggaagacctcaacatccaattggttccttcctattccttagtccaactggtgttggtaaaac |
190 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| || |||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
43064813 |
agagctggtttaggaagagctcaacaaccaacatgtcccttcctattccttggtccaattggtgttggtaaaac |
43064740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 43065032 - 43065107
Alignment:
| Q |
117 |
agagctggtttaggaagacctcaacatccaattggt--tccttcctattccttagtccaactggtgttggtaaaac |
190 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| |||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
43065032 |
agagctggtttaggaagagctcaacatccaaaaggtgttccttcatgttcctttgtccaactggtgttggtaaaac |
43065107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University