View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119_low_34 (Length: 203)
Name: NF3119_low_34
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 2e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 36251236 - 36251319
Alignment:
| Q |
105 |
tctcaacaccgacacacacatacacatgttattacattctattagttcattttctcaaattattaaagatgtcgattttgtgtc |
188 |
Q |
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| T |
36251236 |
tctcaacacctacacacacatacacatgttattacattctattagttcattttctcaaattattaaagatgtcaattttgtgtc |
36251319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 48317644 - 48317605
Alignment:
| Q |
130 |
atgttattacattctattagttcattttctcaaattatta |
169 |
Q |
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| T |
48317644 |
atgttattacattcaattatttcattttctcaaattatta |
48317605 |
T |
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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 28524492 - 28524544
Alignment:
| Q |
126 |
acacatgttattacattctattagttcattttctcaaattattaaagatgtcg |
178 |
Q |
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| T |
28524492 |
acacatgtgattacattctatcatttcattttttcaaattattactgatgtcg |
28524544 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 3066093 - 3066050
Alignment:
| Q |
126 |
acacatgttattacattctattagttcattttctcaaattatta |
169 |
Q |
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| T |
3066093 |
acacatgttattacattcaattaatccattttctcaaattatta |
3066050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 31277036 - 31277075
Alignment:
| Q |
130 |
atgttattacattctattagttcattttctcaaattatta |
169 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||| |
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| T |
31277036 |
atgtgattacattcaattagttcattttctcaaattatta |
31277075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 2796597 - 2796553
Alignment:
| Q |
126 |
acacatgttattacattctattagttcattttctcaaattattaa |
170 |
Q |
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|||||||| |||| |||| |||| ||||||||||||||||||||| |
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| T |
2796597 |
acacatgtgattaaattcaattaattcattttctcaaattattaa |
2796553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 38108117 - 38108077
Alignment:
| Q |
137 |
tacattctattagttcattttctcaaattattaaagatgtc |
177 |
Q |
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||||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
38108117 |
tacattcaattagtttattttctcaaattattacagatgtc |
38108077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 38117741 - 38117701
Alignment:
| Q |
137 |
tacattctattagttcattttctcaaattattaaagatgtc |
177 |
Q |
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||||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
38117741 |
tacattcaattagtttattttctcaaattattacagatgtc |
38117701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 47542586 - 47542543
Alignment:
| Q |
126 |
acacatgttattacattctattagttcattttctcaaattatta |
169 |
Q |
| |
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|||||||| ||||||||| | ||||||||||||||||||||||| |
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| T |
47542586 |
acacatgtgattacattcaaatagttcattttctcaaattatta |
47542543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 49636837 - 49636877
Alignment:
| Q |
129 |
catgttattacattctattagttcattttctcaaattatta |
169 |
Q |
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||||| ||||||||| |||| |||||||||||||||||||| |
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| T |
49636837 |
catgtgattacattcaattaattcattttctcaaattatta |
49636877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 28322292 - 28322251
Alignment:
| Q |
126 |
acacatgttattacattctattagttcattttctcaaattat |
167 |
Q |
| |
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|||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
28322292 |
acacatgtgattacattcaattaattcattttctcaaattat |
28322251 |
T |
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