View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119_low_4 (Length: 465)
Name: NF3119_low_4
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 40658949 - 40659379
Alignment:
| Q |
19 |
ctaaaccactttcaaccatggtaattaagttcctcgaaaggttgtcacaggtatcccaatgacagtgtgacatgtgtccatgttcgatgacatcaacgtc |
118 |
Q |
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| T |
40658949 |
ctaaaccactttcaaccatggtaattaagttcctcgaaaggttgtcacaggtatcccaatgacagtgtgacatgtgtccatgttcgatgacatcaatgtc |
40659048 |
T |
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| Q |
119 |
gttatctccaatctgacggagatgttgattatggcatgtcccctggaaccgtctttacctcgtagccggtaactcaggtaccgaactgagccaggtgtaa |
218 |
Q |
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| T |
40659049 |
gttatctccaatctgacggagatgttgattatggcatgtcccctggaaccgtctttacctcgtagccggtaactcaggtaccgaactgagccaggtgtaa |
40659148 |
T |
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| Q |
219 |
gaaggccgatatctgaagcgggaataaaacaccacccaagttgagcctgccccatgattcttctcttggtgaaaacctgaaggtatagacaggaagatgg |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40659149 |
gaaggccgatatctgaagccggaataaaacaccacccaagttgagcctgccccatgattcttctcttggtgaaaacctgaaggtatagacaggaagatgg |
40659248 |
T |
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| Q |
319 |
gtctgaaaagaaggtaggatcgagtggtacatggaacatgttaatattatcacatgccttaggtggtgttgaggtggttggtgggaatttggtgagtgtg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40659249 |
gtctgaaaagaaggtaggatcgagtggtacatggaacatgttaatattatcacatgccttaggtggtgttgaggtggctggtgggaatttggtgagtgtg |
40659348 |
T |
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| Q |
419 |
atgacgggttttatggtagggttgagatagg |
449 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
40659349 |
atgaagggttttatggtagggttgagatagg |
40659379 |
T |
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