View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3119_low_6 (Length: 425)
Name: NF3119_low_6
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3119_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 33624109 - 33624501
Alignment:
| Q |
18 |
gatctttaatctcaaatgattgcacttcatattcttgctcgtatcacaatacaagagggtaatctttccatatttttgaacaggtgacaatatataatgg |
117 |
Q |
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| T |
33624109 |
gatctttaatctcaaatcattgcacttc------ttgctcgtatcacagtacaagggggtaatctttccatatttttgaacaggtgacaatatataatgg |
33624202 |
T |
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| Q |
118 |
g-actgtagtgtcggtatgattatagtcttttcagggcatgaataaaatgtcaaagttaatttccttttcatgaactctctccatcaagtatctatctat |
216 |
Q |
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| T |
33624203 |
ggactgtagtgtcggtatgattatagtcttttcagggcatgaataaaatgtcaaagttaatttccttttcatgaactctctccatcaagtatctatctat |
33624302 |
T |
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| Q |
217 |
atctatctatagatgataatctattttannnnnnngacaaagtatgtatgataatcttgtatacgctatgtaa-aaccnnnnnnntaatcttgtacgtta |
315 |
Q |
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| T |
33624303 |
atctatctatagatgataatctattttatttttttgacaaagtatgtatgataatcttgtatacgctatgtaataaccaaaaaaataatcttgtacgtta |
33624402 |
T |
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| Q |
316 |
gattattgagatcgaccgtgttattggtgatgttaatcaagtagctgatattcttttaaatattggcttagtttagatttccaaataaatgtttttcat |
414 |
Q |
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| T |
33624403 |
gattattgagatcgaccgtgttattggtgatgttaatcaagtagctgatactcttttaaatattggcttagtttagatttccaaataaatgtttttcat |
33624501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 33620748 - 33620889
Alignment:
| Q |
68 |
acaagagggtaatctttccatatttttgaacaggtgacaatatataatgggactgtagtgtcggtatgattatagtcttttcagggcatgaataaaatgt |
167 |
Q |
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| T |
33620748 |
acaagtggataatatttcgatattattgaacaggtgacaataaatcatggggctgtattg---gtattattttagtctttgaagggcatgaataaaatgt |
33620844 |
T |
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| Q |
168 |
caaagttaatttccttttcatgaactctctccatcaagtatctat |
212 |
Q |
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| T |
33620845 |
caaagttaatttccttttcatgaactttctccatcaagtacctat |
33620889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 33626730 - 33626826
Alignment:
| Q |
93 |
ttgaacaggtgacaatatataatgggactgtagtgtcggtatgattatagtcttttcagggcatgaataaaatgtcaaagttaatttccttttcatgaac |
192 |
Q |
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| T |
33626730 |
ttgaacaagtgaccataaataatggggc---agtgtcggtatggttatagccttttaggagcatgaataaaacgtcaaagttaatttcgttttcatgaac |
33626826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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