View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3119_low_7 (Length: 424)

Name: NF3119_low_7
Description: NF3119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3119_low_7
NF3119_low_7
[»] chr2 (1 HSPs)
chr2 (148-219)||(29522108-29522179)
[»] chr7 (1 HSPs)
chr7 (162-219)||(17978242-17978299)
[»] chr6 (1 HSPs)
chr6 (78-115)||(32504383-32504420)
[»] chr3 (1 HSPs)
chr3 (78-115)||(19972810-19972847)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 29522108 - 29522179
Alignment:
Q  148 cagttcctattcttttttcccaattgatttacctaagatattaaaagggagaacatttgaggcaaattattt 219  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  29522108 cagttcccattcttttttcccaattgatttacctaagatattaaaagagaggacatttgaggcaaaatattt 29522179  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 17978242 - 17978299
Alignment:
Q  162 ttttcccaattgatttacctaagatattaaaagggagaacatttgaggcaaattattt 219  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  17978242 ttttcccaattgatttacctaagatattaaaagagaggacatttgaggcaaattattt 17978299  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 32504420 - 32504383
Alignment:
Q  78 tctaaagctagctctaattccaaccgtgaatagattag 115  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  32504420 tctaaagctagctctaattccaaccatgaatagattag 32504383  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 19972810 - 19972847
Alignment:
Q  78 tctaaagctagctctaattccaaccgtgaatagattag 115  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  19972810 tctaaagctagctctaattccaaccatgaatagattag 19972847  T

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