View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120-Insertion-3 (Length: 641)
Name: NF3120-Insertion-3
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120-Insertion-3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 606; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 8 - 641
Target Start/End: Original strand, 12513678 - 12514311
Alignment:
| Q |
8 |
gtaagttatttgatcaaggattgttaaaagagcaaactacaactagaaccaactcaacctaattttaatgactcaaaaggatagttaatgctgattaaaa |
107 |
Q |
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| T |
12513678 |
gtaagttatttgatcaaggattgttaaaagagcaaactacaactagaaccaactcaacctaattttaatgactcaaaaggatagttaatgctgattaaaa |
12513777 |
T |
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| Q |
108 |
ccatatctcttttacttatatatttggtgtaacacaggtttaacattcgaaatcattcaagtgataatataatcaaaatgtgatgttctacaagtaataa |
207 |
Q |
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| T |
12513778 |
ccatatctcttttacttatatatttggtgtaacacaggtttaccattctaaatcaatcaagtgataatataatcaaaatgtgatgttctacaagtaataa |
12513877 |
T |
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| Q |
208 |
taaatgaatgagaaaagtgatggcaagtaaataagaaaggccaaaggcccagaattagcgaaattaaagtaaataaataaagcaaacctattatgatgta |
307 |
Q |
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| T |
12513878 |
taaatgaatgagaaaagtgatggcaagagaataagaaaagccaaaggcccagaattagcgaaattaaagtaaataaataaagcaaacctattatgatgta |
12513977 |
T |
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| Q |
308 |
ctacacgaatacaattatatgcaagtttcttcactcggtagttcacgaaagcacatacagacgagtaactctcaccagcaaaaagtttcacagcatcccc |
407 |
Q |
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| T |
12513978 |
ctacacgaatacaattatatgcaagtttcttcactcggtagttcacgaaagcacatacagacgagtaactctcaccagcaaaaagtttcacagcatcccc |
12514077 |
T |
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| Q |
408 |
tgttgcatatatttaaattcaattatatacaatcatcataagacttacaaatgacatgatagacaacctcttagtgagttaaatagtaagtactagttag |
507 |
Q |
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| T |
12514078 |
tgttgcatatatttaaattcaattatatacaatcatcataagacttacaaatgacatgatagacaacctcttagtgagttaaatagtaagtactagttag |
12514177 |
T |
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| Q |
508 |
taaaacggcatgataggcatgggggaaatatgttagtaaaccttagtgattatatttatagtaaggttggcaatatggatcaaatgagaaaccagtttaa |
607 |
Q |
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| T |
12514178 |
taaaacagcatgataggcatgggggaaatatgttagtaaaccttagtgattatatttatagtaaggttggcaatatggatcaaatgagaaaccagtttaa |
12514277 |
T |
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| Q |
608 |
atataatttattttcttaatggtttccctataca |
641 |
Q |
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| T |
12514278 |
atataatttattttcttaatggtttccctataca |
12514311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 429
Target Start/End: Original strand, 12484984 - 12485407
Alignment:
| Q |
9 |
taagttatttgatcaaggattgttaaaagagcaaactacaactagaaccaactcaacctaattttaatgactcaaaaggatagttaatgctgattaaaac |
108 |
Q |
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| T |
12484984 |
taagttatttgatccaggattgttaaaagaacaaactacaactagaaccaactcaacctaattttaacgactcaaaaggatagttaatgttgattataat |
12485083 |
T |
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| Q |
109 |
catatctcttttacttatata--tttggtgtaacacaggtttaacattcgaaatcattcaagtgataatataatcaaaatgtgatgttc---tacaagta |
203 |
Q |
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| T |
12485084 |
catctctctcttgcttatatatctttgctgtaacacaagatttccattctaaattatttgagtgataatataaactaaaagttgtgttctaataataata |
12485183 |
T |
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| Q |
204 |
ataataaatgaatgagaaaagtgatggcaagtaaataagaaaggccaaaggcccagaattagcgaaattaaagtaaataaataaagcaaacctattatga |
303 |
Q |
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| T |
12485184 |
ataataaatgaa-gaggaaagtaacggcaagagaataagaaaagccaaaagcccaaaattagtg-aattaaaataaataagtaaagcaaacctattatga |
12485281 |
T |
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| Q |
304 |
tgtactacacgaatacaattatatgcaagtttcttcactcggtagttcacgaaagcacatacagacgagtaactctcaccagcaaaaagtttcacagcat |
403 |
Q |
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| T |
12485282 |
tgtactgcacgaatacaattatatgcaagtttcttcacccggtagttcacgagagcacatacagatgagtaattttcaccagcaaaaagtctcacagcat |
12485381 |
T |
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| Q |
404 |
cccctgttgcatatatttaaattcaa |
429 |
Q |
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| T |
12485382 |
tccctgttgcatatatttaaattcaa |
12485407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 436 - 531
Target Start/End: Original strand, 12485583 - 12485679
Alignment:
| Q |
436 |
acaatcatcataagacttacaaatgacatgatagacaacctcttagtgagttaaatagtaagtactagttagtaaaac-ggcatgataggcatgggg |
531 |
Q |
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| T |
12485583 |
acaatcatcaataggcttacagacggcatgataggcaacctcttagttagttaaatagttattactagttaataaaacgggcatgataggcatgggg |
12485679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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