View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120-Insertion-4 (Length: 600)
Name: NF3120-Insertion-4
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 7 - 600
Target Start/End: Complemental strand, 50974068 - 50973468
Alignment:
| Q |
7 |
atttatttggttttttactctacatattatgacactaatttctttatggtgtttatgatgtt-ataatttgacaaatctcatcttattggaattgatata |
105 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
50974068 |
atttatttggttttttacattacagattatgacactaatttctttatggtgtttatgatgtttataatttgacgaatctcatcttattggaattgatata |
50973969 |
T |
|
| Q |
106 |
tatgtcgctaaagctaatgagttctaac-atttattatcaataaattcaatttaagggaagacataatcaaatttaaggacaaatttaaaac-attttta |
203 |
Q |
| |
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||||||||||||||||||||||| || | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50973968 |
tatgtcgctaaagctaatgagttatacctattttttaacaataaattcaatttaagggaagacataatcaaatttaaggacaaatttaaaactattttta |
50973869 |
T |
|
| Q |
204 |
ttagtgatatgatatcttttactaatagtaggtgcaggaagaatgacacatatgttgtgaggacttggtcatccttttgagtgtgtttaaatctatggcg |
303 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50973868 |
ttagtgatatgatatcttttactaatattaggtgcaggaagaatgacacatatgttgtgaggacttggtcatccttttgagtgtgtttaaatctatggcg |
50973769 |
T |
|
| Q |
304 |
ttggagcagactctaatgcaaccatgctaaaatatataggttcaaaaacacatgaaaaatgatggctcataaggattacagtgagcggaaattgtggaag |
403 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50973768 |
ttggagcagactctaatgcaaccatgctaaaatatataggttcaaaaacacatgaacaatgatggctcataaggattacagtgagcggaaattgtggaat |
50973669 |
T |
|
| Q |
404 |
cctttatttcttgctattcaagaatgggattgcagctggcgtggcaacgtaacaaaagttgtgtcataagagttggagggtgtctgtttatatggtttga |
503 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50973668 |
cctttatttcttgctattcaaaaatgggattgcagctggcgtggcaacgtaacaaaagttgtgtcgtaagagttggagggtgtctgtttatatggtttga |
50973569 |
T |
|
| Q |
504 |
taattgtgaagtagaatttaaaattcaaagatg----taagtattctattttttgttctcactaaacattataaatgcatcgactctttggtttgactta |
599 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
50973568 |
taattgtgaagtagaatttaaaattcaaagatgtctataagtattctactttttgttctcattaaacattataaatgcatcgacacttgggtttgactta |
50973469 |
T |
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| Q |
600 |
t |
600 |
Q |
| |
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| T |
50973468 |
t |
50973468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 7 - 600
Target Start/End: Complemental strand, 26838963 - 26838366
Alignment:
| Q |
7 |
atttatttggttttttactctacatattatgacactaatttctttatggtgtttatgatgttataatttgacaaatctcatcttattggaattgatatat |
106 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26838963 |
atttatttggttttttacactacagattatgacactaatttctttatggtgtttatgatgttataatttgaagaatctcatcttattggaattgatatat |
26838864 |
T |
|
| Q |
107 |
atgtcgctaaagctaatgagttctaacatttattatcaataaattcaatttaagggaagacataatcaaatttaaggacaaatttaaaacatttttatta |
206 |
Q |
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|||||||| |||||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26838863 |
atgtcgctgaagctaatgagttctaccattttttaacaataaattcaatttaagggaagaaataatcaaatttaaggacaaatttaaaacatttttatta |
26838764 |
T |
|
| Q |
207 |
gtgatatgatatcttttactaatagtaggtgcaggaagaatgacacatatgttgtgaggacttggtcatccttttgagtgtgtttaaatctatggcgttg |
306 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26838763 |
gtgatatgatatcttttactaatattagatgcaggaagaatgacacacatgttgtgaggacttggtcatccttttgagtgtgtttaaatctatggcgttg |
26838664 |
T |
|
| Q |
307 |
gagcagactctaatgcaaccatgctaaaatatataggttcaaaaacacatgaaaaatgatggctcataaggattacagtgagcggaaattgtggaagcct |
406 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26838663 |
gagtagactctaatgcaaccatgctaaaatatataggttcaaaaacacatgaaaaatgatggctcataaggattacaatgagcggaaattgtggaagcct |
26838564 |
T |
|
| Q |
407 |
ttatttcttgctattcaagaatgggattgcagctggcgtggcaacgtaacaaaagttgtgtcataagagttggagggtgtctgtttatatggtttgataa |
506 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |
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| T |
26838563 |
ttatttcttgctattcaaaaatgggattgcagctggcgtggcaacgtaacaaaagttgcgtcataagagttggagggtgtctgtttataaggtttgaaaa |
26838464 |
T |
|
| Q |
507 |
ttgtgaagtagaatttaaaattcaaagatg----taagtattctattttttgttctcactaaacattataaatgcatcgactctttggtttgacttat |
600 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||| |||||| ||||| |
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| T |
26838463 |
ttgtgaagtagaatttaaaattcaaagatgtctataagtattctactttttgttctcattaaacattataaatgcatcgacacttgggtttggcttat |
26838366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 14194 - 14046
Alignment:
| Q |
10 |
tatttggttttttactctacatattatgacactaatttctttatggtgtttatgatgttataatttgacaaatctcatcttattggaattgatatatatg |
109 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||| ||||||||| |||||||||| ||||||||||||||||||| |
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| T |
14194 |
tatttggttttttacactacagattatgacactaatttctttatgatgtgaatgatgcaataatttgaagaatctcatctcattggaattgatatatatg |
14095 |
T |
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| Q |
110 |
tcgctaaagctaatgagttctaacatttattatcaataaattcaattta |
158 |
Q |
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||||| |||||||||||||||| |||| ||| |||||||||||||||| |
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| T |
14094 |
tcgctgaagctaatgagttctaccattctttaacaataaattcaattta |
14046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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