View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120-Insertion-6 (Length: 510)
Name: NF3120-Insertion-6
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120-Insertion-6 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 510
Target Start/End: Original strand, 45887120 - 45887621
Alignment:
| Q |
9 |
cttcttcctctgctgctccttctgcagcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaac---aaccaccaccaccat |
105 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45887120 |
cttcttcttctgctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaacaaccaccaccaccat |
45887219 |
T |
|
| Q |
106 |
tcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45887220 |
tcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatct |
45887319 |
T |
|
| Q |
206 |
tcagctacttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtgagataattttctaagatatat-- |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45887320 |
tcagctacttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtgagattattttctaagatatatat |
45887419 |
T |
|
| Q |
304 |
--------agaggccgtacttctatgnnnnnnnattcctgttccgtatcattatgaatttgaatttttgtttgatctattcaaactcattcttgtagtat |
395 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45887420 |
agccagacagaggccgtacttctatctttttttattcctgttccgtatcattatgaatttgaatttttgtttgatctattcaaactcattcttgtggtat |
45887519 |
T |
|
| Q |
396 |
taattactaatctagtattgttttttctgtttttattattgtgcttaaatattgaatgattactggttactgatttttc-tttttattacttctttggtt |
494 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
45887520 |
taattactaatctagtattgttttttc--------------tgcttaaatattgaatgattactggttactgatttttctttttttttacttctttggtt |
45887605 |
T |
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| Q |
495 |
caatctacgtgggatc |
510 |
Q |
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||||||| |||||||| |
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| T |
45887606 |
caatctatgtgggatc |
45887621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 510
Target Start/End: Original strand, 45703314 - 45703817
Alignment:
| Q |
9 |
cttcttcctctgctgctccttctgcagcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaac---aaccaccaccaccat |
105 |
Q |
| |
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||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45703314 |
cttcttcttcttctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaacaaccaccaccaccat |
45703413 |
T |
|
| Q |
106 |
tcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45703414 |
tcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatct |
45703513 |
T |
|
| Q |
206 |
tcagctacttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtgagataattttctaagatatat-- |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45703514 |
tcagctacttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtgagattattttctaagatatatat |
45703613 |
T |
|
| Q |
304 |
--------agaggccgtacttctatgnnnnnnnattcctgttccgt--atcattatgaatttgaatttttgtttgatctattcaaactcattcttgtagt |
393 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45703614 |
agccagacagaggccgtacttctatctttttttattcctgttccgtacatcattatgaatttgaatttttgtttgatctattcaaactcattcttgtggt |
45703713 |
T |
|
| Q |
394 |
attaattactaatctagtattgttttttctgtttttattattgtgcttaaatattgaatgattactggttact-gatttttctttttattacttctttgg |
492 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
45703714 |
attaattactaatctagtattgttttttc--------------tgcttaaatattgaatgattactggttactggatttttcttttttttacttctttgg |
45703799 |
T |
|
| Q |
493 |
ttcaatctacgtgggatc |
510 |
Q |
| |
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||||||||| |||||||| |
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| T |
45703800 |
ttcaatctatgtgggatc |
45703817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 115 - 302
Target Start/End: Complemental strand, 45650276 - 45650089
Alignment:
| Q |
115 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctact |
214 |
Q |
| |
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|||| ||||||| |||||||| ||||||| |||||| |||| |||||| || ||||| |||||||| |||||| ||| ||||||||||||||| ||||| |
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| T |
45650276 |
tgcaacaccatcgccatcagggaaaggttcaccttctgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctact |
45650177 |
T |
|
| Q |
215 |
tgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtgagataattttctaagatata |
302 |
Q |
| |
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||||||||||||||||||| || ||||| | |||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||| |
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| T |
45650176 |
agtatctcaccaattgttgctttatttttcactgtttcatggatcttgatcagttatatactggtgtgagataattttccgagatata |
45650089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 115 - 283
Target Start/End: Complemental strand, 45643021 - 45642850
Alignment:
| Q |
115 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccact---cctaccatgcaaagtgcatcttcagct |
211 |
Q |
| |
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|||| |||||| ||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
45643021 |
tgcaacaccattaccatcagggaaaggttcaccttccgatcgcacccctgccgcaacaaccaccaccactactcctaccatacaaagtgcatcttcagct |
45642922 |
T |
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| Q |
212 |
acttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtga |
283 |
Q |
| |
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||| |||||||||| |||||| |||||||| | |||||| |||||||||||| || | ||||| |||||| |
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| T |
45642921 |
actaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatccatcatatattagtgtga |
45642850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 45643040 - 45642941
Alignment:
| Q |
12 |
cttcctctgctgctccttctgcagcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaaccaccaccaccattcctac |
111 |
Q |
| |
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|||| |||||||||||||||||| |||||| ||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||| | |||||| |
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| T |
45643040 |
cttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcac---cttccgatcgcacccctgccgcaacaaccaccaccactactcctac |
45642944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 45650286 - 45650211
Alignment:
| Q |
21 |
ctgctccttctgcagcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaaccaccac |
99 |
Q |
| |
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|||||||||||||| ||||||| |||||||| ||||||||||||||| |||| |||||| || ||||| |||||||| |
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| T |
45650286 |
ctgctccttctgcaacaccatcgccatcagggaaaggttcaccttct---gatggcacccctgctgcaaccaccaccac |
45650211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 510
Target Start/End: Complemental strand, 45642706 - 45642606
Alignment:
| Q |
417 |
tttttctgtttttattatt-gtgcttaa-atattgaatgattactggttactga-----tttttctttttattacttctttggttcaatctacgtgggat |
509 |
Q |
| |
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||||||||||||| || || |||||||| ||| |||||||| | |||||||||| ||||| ||||| ||||||||||||||||||||| || |||| |
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| T |
45642706 |
tttttctgttttttttttttgtgcttaatatactgaatgatcattggttactgagtcttttttttttttttttacttctttggttcaatctatgtaggat |
45642607 |
T |
|
| Q |
510 |
c |
510 |
Q |
| |
|
| |
|
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| T |
45642606 |
c |
45642606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 266
Target Start/End: Original strand, 1193588 - 1193690
Alignment:
| Q |
167 |
gcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctacttgtatctcaccaattgttg---ccttcttttttattgtttcatggatcttga |
263 |
Q |
| |
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||||| |||||||| |||||||| | |||||||||||||||||||||| | ||| ||||||||||| | || ||||| ||||||||||||||||||| |
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| T |
1193588 |
gcaactaccaccactactcctactacgcaaagtgcatcttcagctactaggctctaaccaattgttgcttctttatttttcattgtttcatggatcttga |
1193687 |
T |
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| Q |
264 |
tca |
266 |
Q |
| |
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||| |
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| T |
1193688 |
tca |
1193690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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