View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120-Insertion-8 (Length: 301)
Name: NF3120-Insertion-8
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120-Insertion-8 |
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| [»] chr1 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 46440914 - 46441207
Alignment:
| Q |
8 |
aacatgactgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtgaggcttttcaat |
107 |
Q |
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| T |
46440914 |
aacatgactgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtgaggcttttcaat |
46441013 |
T |
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| Q |
108 |
tgataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgctaaa |
207 |
Q |
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| T |
46441014 |
cgataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgctaaa |
46441113 |
T |
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| Q |
208 |
caaccttgctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccatcgatt |
301 |
Q |
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| T |
46441114 |
caaccttgctgatgaggttgttgtcatccttaatttcctagagagttctcattgccctaacgtttatgtacacgaatcaaatttgccattgatt |
46441207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 18331725 - 18331473
Alignment:
| Q |
16 |
tgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtgaggcttttcaattgataaat |
115 |
Q |
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| T |
18331725 |
tgtgaccaaagaagaatttaacttgttttacagtgttgatcgacaactcttcactcgtttgctggtcgcgcttgatcgtgagatctctcagtcaataaat |
18331626 |
T |
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| Q |
116 |
gtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgctaaacaaccttg |
215 |
Q |
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| T |
18331625 |
gtaatggccttcctcatgtggcttgagaggaaatccaaatactataatttagtagcaaagattcttcaacaatggtcggatgttatgcttagcaaccttg |
18331526 |
T |
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| Q |
216 |
ctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaac |
268 |
Q |
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| T |
18331525 |
ctgacgaggctgttgtcatcctgaattgcattgggagttcccattaccctaac |
18331473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 257
Target Start/End: Original strand, 17616220 - 17616367
Alignment:
| Q |
110 |
ataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgctaaaca |
209 |
Q |
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| T |
17616220 |
ataagtgtaatggctttcttgatttggattgaaagaaaaagtaaacaattcaatttggtagcaaatactcttcaacattggcctaatgtcatgctaagca |
17616319 |
T |
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| Q |
210 |
accttgctgatgaggttgttgtcatccttaatttcatagagagttctc |
257 |
Q |
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| T |
17616320 |
gtcttgctgatgagtttgttgtaatccttaattgcattgagagttctc |
17616367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 11574488 - 11574589
Alignment:
| Q |
200 |
atgctaaacaaccttgctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccatcga |
299 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||| ||| || | |||||||| ||||||| || |||| | ||||||||||||||| || |
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| T |
11574488 |
atgctaagcaaccttgctgatgaggttgttgtcatcctgaattgcatcgaaatttctcattaccctaacacttttgtaggccaatcaaatttgccattga |
11574587 |
T |
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| Q |
300 |
tt |
301 |
Q |
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|| |
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| T |
11574588 |
tt |
11574589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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