View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3120-Insertion-9 (Length: 276)

Name: NF3120-Insertion-9

Description: NF3120

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3120-Insertion-9

[»] chr7 (5 HSPs)

Alignment Details

Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 5)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 145; E-Value: 2e-76

Query Start/End: Original strand, 117 - 276

Target Start/End: Complemental strand, 28787471 - 28787311

Alignment:

Q	117	cacgtttcatatttcacaagtatttcaaggcaggaaagttagataat-aattactgatcaagagagtaaattagaggtacatacagcacttaggttaagt	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28787471	cacgtttcatatttcacaagtatttcaaggcaggaaagttagataattaattactgatcaagagagtaaattagaggtacatacaccacttaggttaagt	28787372	T

Q	216	gttaatactggttgtgcacaagaaaatgagctagaaactcacatattgattcggataggcg	276	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28787371	gttaatattggttgtgcacaagaaaatgagctagaaactcacatattgattcggataggcg	28787311	T

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Target: chr7; HSP #2

Raw Score: 84; E-Value: 6e-40

Query Start/End: Original strand, 155 - 242

Target Start/End: Complemental strand, 28773575 - 28773488

Alignment:

Q	155	ttagataataattactgatcaagagagtaaattagaggtacatacagcacttaggttaagtgttaatactggttgtgcacaagaaaat	242	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28773575	ttagataataattactgatcaagagagtaaattagaggtacatacaccacttaggttaagtgttaatactggttgtgcacaagaaaat	28773488	T

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Target: chr7; HSP #3

Raw Score: 47; E-Value: 7e-18

Query Start/End: Original strand, 29 - 75

Target Start/End: Complemental strand, 28787564 - 28787518

Alignment:

Q	29	ctttcagaaattaaacgggaccttagtttcaaaaggagtaacactgc	75	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28787564	ctttcagaaattaaacgggaccttagtttcaaaaggagtaacactgc	28787518	T

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Target: chr7; HSP #4

Raw Score: 40; E-Value: 0.0000000000001

Query Start/End: Original strand, 30 - 69

Target Start/End: Complemental strand, 28773717 - 28773678

Alignment:

Q	30	tttcagaaattaaacgggaccttagtttcaaaaggagtaa	69	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28773717	tttcagaaattaaacgggaccttagtttcaaaaggagtaa	28773678	T

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Target: chr7; HSP #5

Raw Score: 29; E-Value: 0.0000004

Query Start/End: Original strand, 244 - 276

Target Start/End: Complemental strand, 28773460 - 28773428

Alignment:

Q	244	agctagaaactcacatattgattcggataggcg	276	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28773460	agctagaaactcacattttgattcggataggcg	28773428	T

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