View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120-R-Insertion-1 (Length: 1008)
Name: NF3120-R-Insertion-1
Description: NF3120-R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120-R-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 201 - 562
Target Start/End: Complemental strand, 46267396 - 46267052
Alignment:
| Q |
201 |
aagaattagagtgaacaagagatcaaaggttgtaataagcaaagtaaacacttgttccatcttaagacatataatttagnnnnnnnnnnnnnnnnaagga |
300 |
Q |
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| T |
46267396 |
aagaattagagtgaacaagagatcaaaggttgtaataagcaaagtaaacacttgttccatcttaagacatataatttagtttttttttttt----aagga |
46267301 |
T |
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| Q |
301 |
catagaatttagtttgttagacaaagttattaaatgaaaagactaaaaaagacactagcttgttcattcgttggacctagtgttgtgtttattttccctc |
400 |
Q |
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| T |
46267300 |
catagaatttagtttgttagacaaagttattaaa-------------aaagacactagcttgttcattcgttggacctagtgttgtgtttattttccctc |
46267214 |
T |
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| Q |
401 |
catcacggtggtttgttttttaaggttgacatgcacaaatgacacatatgttggaaagaaggaacaagacccgctctaaattgaagagatgattttggat |
500 |
Q |
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| T |
46267213 |
catcacggtggtttgttttttaaggttgacatgcacaaatgacacatatgttggaaagaaggaacaagacccgctctaaattgaagagatgattttggat |
46267114 |
T |
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| Q |
501 |
ccaaacatttctcacattacattccattttgagaagaaagagaaaccacattatccaacaca |
562 |
Q |
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| T |
46267113 |
ccaaacatttctcacattacattccattttgagaagaaagagaaaccacattatccaacaca |
46267052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 669 - 1003
Target Start/End: Complemental strand, 46266945 - 46266596
Alignment:
| Q |
669 |
accaggtatataccactattcatattcatataagaatgattatgtttttcccatttacgtatatgtttttattgatgtcaatcatgcattgaactgcatt |
768 |
Q |
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| T |
46266945 |
accaggtatataccactattcatattcatataagaatgattatgtttttcccatttacgtatatgtttttattgatgtcaatcatgcattgaactgcatt |
46266846 |
T |
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| Q |
769 |
gtcgttttgatgaacacgttgatgcaggtattgattgccgttttgatttccgctccgctggtgattcatttcagatagttctgtga-ttttggatcacag |
867 |
Q |
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| T |
46266845 |
gtcgttttgatgaacatgttgatgcaggtattgattgcggttttgatttccgctccgctggtgaatcatttcagatagttctgtgatttttggatcacag |
46266746 |
T |
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| Q |
868 |
atatgaccaacac-aatgccgaattgtctcaggtatat----acatctttttatttatta-tcactttcata--ctac-tttcatgcacataatctattg |
958 |
Q |
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| T |
46266745 |
atatgaccaacacaaatgccgaattgtctcaggttaattataacatctttttatttattattcactttcataacttacttttcatgcacataatctattg |
46266646 |
T |
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| Q |
959 |
g-tgt-aaaatagtacatcat-tacata-tat-gtacatacatgagtttt |
1003 |
Q |
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| T |
46266645 |
gttgtaaaaatagtacatcatatacatattatggtacatacatgagtttt |
46266596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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