View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120-R-Insertion-2 (Length: 988)
Name: NF3120-R-Insertion-2
Description: NF3120-R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120-R-Insertion-2 |
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| [»] scaffold0025 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 236 - 599
Target Start/End: Complemental strand, 51232664 - 51232296
Alignment:
| Q |
236 |
aaagggtaaaatagacatttttt-atgatttgtaggggtaggggcataattgttggggtatgggtataacttccagtaatgttttaaccctaagttatcg |
334 |
Q |
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|||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51232664 |
aaagggtaaaattgacatttttttatgatttgtaagggtaggggcataattgttggggtatgggtataacttccagtaatgttttaaccctaagttatcg |
51232565 |
T |
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| Q |
335 |
gtttacatctgcatattcgatttgtgtaatttat------atttctaaatattaactacactttgtctatagtatgtataattgaactattaaattattt |
428 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51232564 |
gtttacatctgcatattcgatttgtgtaatttatatttatatttcaaaatattaactacactttgtctatagtatgtataattgaactattaaattattt |
51232465 |
T |
|
| Q |
429 |
tcaagtatcatttctggcannnnnnnnnnnnnnnnnnnngccttgttacttacaagttacaacataaaatgaagggtggatatctcattattttgttgaa |
528 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51232464 |
tcaaatatcatttctggca-----------tttttttttgccttgttacttacaagttacaacataaaatgaagggtggatatctc---attttgttgaa |
51232379 |
T |
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| Q |
529 |
ctatgagtttaaaggagttaaagt------------tgatggcgaaagagaatatgctagcatctaaaatggatttgctcgtt |
599 |
Q |
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| T |
51232378 |
ctatgagtttaaaggagttaaagttcaaggttcaaatcatggcgaaagagaatatgctagcatctaaaatggatttgctcgtt |
51232296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 51232930 - 51232702
Alignment:
| Q |
9 |
tcatcaattgatctaaaaaaatttgggagnnnnnnnnttagggattgctatttctaaaatttgatatttatgcgaaccttcgaaacttgatttggacttt |
108 |
Q |
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| T |
51232930 |
tcatcacttgatctaaaaaaatttgggagaaaaaaaattagggattgctatttctaaaatttgatatttatgcgaaccttcgaaacttgatttggacttt |
51232831 |
T |
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| Q |
109 |
ttgtgttatggtaatttgtgattctctatgaggtattatgtttatcataaatggagctgctcggatgctggagatgttttgaaaaagaattttggaaaga |
208 |
Q |
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| T |
51232830 |
ta-tgttatggtaatttgtgattctctatgaggtattatgtttatcataaatggagctgctcggatgctggagatgttttgaaaaagaattttggaaaga |
51232732 |
T |
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| Q |
209 |
taacaagaaggtgagatacaattctggaaa |
238 |
Q |
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| T |
51232731 |
taacaagaaggtgagatataattctggaaa |
51232702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 642 - 902
Target Start/End: Complemental strand, 51232254 - 51231987
Alignment:
| Q |
642 |
tcaggttttatggggtggattataggatagaacagaaaattatggcagttatttgttcatgttttttctgatcgatctc------------ttgactgtg |
729 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| |
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| T |
51232254 |
tcaggtttaatagggtggattataggatagaacagaaaattatggcagttatttgttcatgttttttctgatctcttgcagcataaattggttgactgtg |
51232155 |
T |
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| Q |
730 |
aataatttgattgcttgctgtacatatatttctcctcacttcagtatagtaaatctaaaatctgaaaaccgatctatatatggagtctgttacattgtct |
829 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
51232154 |
aataatttgattgcttgctgtacat----ttctcctcacttcagtatagtaa-tctaaaatctaataaccgatctatatatggagtctgttacattgtct |
51232060 |
T |
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| Q |
830 |
ccataccataccatagctaactaggataggtagtggagatattatatagccaaccaaggcatgtgattgcttt |
902 |
Q |
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| T |
51232059 |
ccataccataccatagctaactaggataggtagtggagatattatatagccaaccaaggcatgtgattgcttt |
51231987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 37308433 - 37308548
Alignment:
| Q |
83 |
aaccttcgaaacttgatttggactttttgtgttatggtaatttgtgattctctatgaggtattatgtttatcataaatggagctgctcggatgctggaga |
182 |
Q |
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||||||| |||||||||||||| |||||||||| |||| ||| ||||| | | || |||||| || |||||| | ||||||||| |||| ||||| || |
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| T |
37308433 |
aaccttctaaacttgatttggattttttgtgttctggt-gtttatgattttgtttggggtattttggttatcaggagtggagctgcccggaagctggtga |
37308531 |
T |
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| Q |
183 |
tgttttgaaaaagaatt |
199 |
Q |
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| T |
37308532 |
agtattgaaaaagaatt |
37308548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 11416268 - 11416227
Alignment:
| Q |
252 |
attttttatgatttgtaggggtaggggcataattgttggggt |
293 |
Q |
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| T |
11416268 |
attttttataatttgtaggggtagagggataattgttggggt |
11416227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 49722 - 49677
Alignment:
| Q |
253 |
ttttttatgatttgtaggggtaggggcataattgttggggtatggg |
298 |
Q |
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| T |
49722 |
tttttaattatttgtaggggtaggggtataattgttggggtatggg |
49677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 50320 - 50385
Alignment:
| Q |
233 |
tggaaagggtaaaatagacattttttatgatttgtaggggtaggggcataattgttggggtatggg |
298 |
Q |
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||||||||||||||| | ||||| ||| ||| ||||||||| || ||||||||||||||||||| |
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| T |
50320 |
tggaaagggtaaaattgctattttcaatggtttataggggtagaggtataattgttggggtatggg |
50385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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