View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120-R-Insertion-3 (Length: 961)
Name: NF3120-R-Insertion-3
Description: NF3120-R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120-R-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 866; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 9 - 961
Target Start/End: Complemental strand, 51805023 - 51804064
Alignment:
| Q |
9 |
cagaggaacaagatttcaggacaattaacaccaacaatctctagagcttataaccttgtcaaaattgatttcagttataactttctttctggtccaattc |
108 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805023 |
cagaggaacaagatttcaggacaaataacaccaacaatctctagtgcttataaccttgtcaaaattgatttcagttataactttctttctggtccaattc |
51804924 |
T |
|
| Q |
109 |
cttctgagattggtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctgaactcttctattcctgattcattctcttccttggaatcact |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804923 |
cttctgagattggtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctgaactcttctattcctgattcattctcttccttggaatcact |
51804824 |
T |
|
| Q |
209 |
caaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctctctgtgttgttgcctaattctataaacttttcacacaatcttctt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804823 |
caaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctctctgtgttgttgcctaattctataaacttttcacacaatcttctt |
51804724 |
T |
|
| Q |
309 |
tctggtcctattcctcctaaattgattaaaggagggttagttgaaagctttgcagggaatcctggtttatgtgtgatgatgccggttaatgctaattcat |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804723 |
tctggtcctattcctcctaaattgattaaaggagggttagttgaaagctttgcagggaatcctggtttatgtgtgatgatgccggttaatgctaattcat |
51804624 |
T |
|
| Q |
409 |
ctgatcaaagaaactttccattatgttcggatggttacaagagtaagaagatgaacactatatgggtggccggtgtatctgtgattttgatttttgtagg |
508 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804623 |
ctgatcaaagaaactttccattatgttcacatggttacaagagtaagaagatgaacactatatgggtggccggtgtatctgtgattttgatttttgtagg |
51804524 |
T |
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| Q |
509 |
tgctgctttgttcttgnnnnnnnggtgtggcaaaaatgtgtctgcggttgaacacgaatacacactctcttcatcatttttctcttatgatgttaaaagt |
608 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51804523 |
tgctgctttgttcttgaaaaaaaggtgtggcaaaaatgtgtctgcggttgaacacgaatacacactctcttcatcatttttctcttatgatgttaagagt |
51804424 |
T |
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| Q |
609 |
tttcacatgattagttttgatcaaagagagattgttgagtctttggttgataagaatataatgggacatggagggtcagggacagtgtacaaaatcgagc |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804423 |
tttcacatgattagttttgatcaaagagagattgttgagtctttggttgataagaatataatgggacatggagggtcagggacagtgtacaaaatcgagc |
51804324 |
T |
|
| Q |
709 |
tgaaaaccggagatgttgtggcggttaagaggctttggagtcgaagttcgaaggattcttcgccagaagatgcattatttgtggacaaggcattgaaagc |
808 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804323 |
tgaaaaccggagatgttgtggcggttaagaggctttggagtcgaagttcgaaggattcttcgccagaagatgcattatttgtggacaaggcattgaaagc |
51804224 |
T |
|
| Q |
809 |
tgaggtggaaacacttggaagcataagacacaagaacattgttaagttgtattgttgcttctcaagtttggattgtagcttgt--gtttatgagtatatg |
906 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51804223 |
tgaggtggaaacacttggaagcataagacacaagaacattgttaagttgtattgttgcttctcaagtttggattgtagcttgttggtttatgagtatatg |
51804124 |
T |
|
| Q |
907 |
cc-aatggtactttgtatga-tctct---catagggtggattcatttggattggcctaca |
961 |
Q |
| |
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|| ||||||||||||||||| ||||| || || |||||||||||||||||||||||| |
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| T |
51804123 |
ccaaatggtactttgtatgattctcttcacaagggttggattcatttggattggcctaca |
51804064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 21 - 343
Target Start/End: Original strand, 20017733 - 20018036
Alignment:
| Q |
21 |
atttcaggacaattaacaccaacaatctctagagcttataaccttgtcaaaattgatttcagttataactttctttctggtccaattccttctgagattg |
120 |
Q |
| |
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|||||| |||| |||| || ||||||||| ||||| || ||||||| ||||||||||||||||||| ||||| | ||||||||| ||||| | |||| |
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| T |
20017733 |
atttcaagacatataactccgacaatctcttgagctattagccttgtcgaaattgatttcagttataaatttctctatggtccaatcccttcataaattg |
20017832 |
T |
|
| Q |
121 |
gtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctgaactcttctattcctgattcattctcttccttggaatcactcaaccttctaga |
220 |
Q |
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||||||||||||| ||||| |||||| || |||||| ||||||||| |||||||| || || || | |||||||||||| || |
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| T |
20017833 |
gtaaccttagaaaacttaatttgcttgtgttacaagggaacaagctgg----------------ttcattct--tctttagagttactcaaccttcttga |
20017914 |
T |
|
| Q |
221 |
tctttccagtaatctcttaaccggaaacatccctgaaagcctctctgtgttgttgcctaattctataaacttttcacacaatcttctttctggtcctatt |
320 |
Q |
| |
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|||||||| ||||||||||| | |||||||| ||||||||||||||| |||| ||||||| | ||| | |||||| | ||| |||||| ||| ||| |
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| T |
20017915 |
tctttccaacaatctcttaactgagaacatccccaaaagcctctctgtgtcgttgtctaattccgttaac-tatcacactaccttttttctgttccaatt |
20018013 |
T |
|
| Q |
321 |
cctcctaaattgattaaaggagg |
343 |
Q |
| |
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||||| |||||||| |||||||| |
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| T |
20018014 |
cctccaaaattgatcaaaggagg |
20018036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 371 - 524
Target Start/End: Original strand, 20018039 - 20018195
Alignment:
| Q |
371 |
tggtttatgtgtgatgatgccggttaatgctaattcatctgatcaaagaaact---ttccattatgttcggatggttacaagagtaagaagatgaacact |
467 |
Q |
| |
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||||||||| ||||||||| | || ||||||||||||||||| ||| ||| ||| |||||| || ||||| ||||||||||||| | |||||| |
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| T |
20018039 |
tggtttatgagtgatgatgtcagtgtatgctaattcatctgataaaaaaaaaaaaattctattatgctcacatggtcacaagagtaagaaagttaacact |
20018138 |
T |
|
| Q |
468 |
atatgggtggccggtgtatctgtgattttgatttttgtaggtgctgctttgttcttg |
524 |
Q |
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|| ||||| || ||||||| || ||||| |||||||||| | ||||||||||||| |
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| T |
20018139 |
atttgggtagctggtgtatttggtgttttgttttttgtaggagttgctttgttcttg |
20018195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 558 - 672
Target Start/End: Complemental strand, 36578938 - 36578825
Alignment:
| Q |
558 |
gaacacgaatacacactctcttcatcatttttctcttatgatgttaaaagttttcacatgattagttttgatcaaagagagattgttgagtctttggttg |
657 |
Q |
| |
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||||| || |||||| ||||||||| ||||| ||| ||| ||||||| || ||||||||||| | ||||||||||| ||||||||||||||| ||| | | |
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| T |
36578938 |
gaacatgagtacacattctcttcataatttt-ctcgtattatgttaagagctttcacatgataaattttgatcaaaaagagattgttgagtccttgatgg |
36578840 |
T |
|
| Q |
658 |
ataagaatataatgg |
672 |
Q |
| |
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|||||||||| |||| |
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| T |
36578839 |
ataagaatattatgg |
36578825 |
T |
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Back To:
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