View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120-R-Insertion-4 (Length: 846)
Name: NF3120-R-Insertion-4
Description: NF3120-R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120-R-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 9 - 595
Target Start/End: Complemental strand, 23324704 - 23324118
Alignment:
| Q |
9 |
gttatgtgcctcataaacattcaaaggccgactcagcctatatgaagtttcttgcggtatcgctgggaataagagttatagctgttgttatgatatggga |
108 |
Q |
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| T |
23324704 |
gttatgtgcctcataaacattcaaaggccgactcagcctatatgaagtttcttgcggtatcgctgggaataggagttatagctgttgttatgatatggga |
23324605 |
T |
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| Q |
109 |
tacctaagatgcttcagaagcaagaagaaattttagtcttttatttataattgtttataatacttttgatttaataatatcataccttttgttagttagc |
208 |
Q |
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| T |
23324604 |
tacctaagatgcttcagaagcaagaagaaattttagtcttttatttttaattgtttataatacttttgatttaataatatcataccttttgttagttagc |
23324505 |
T |
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| Q |
209 |
caagttgatttgttttataaggatgatatttatattttgtagttcaatgatgatgttcaattttgcctcatttcaatttaggcaaagtccatgttccata |
308 |
Q |
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| T |
23324504 |
caagttgatttgttttataaggatgatatttatattttgtagttcaatgatgatgttcaattttgcctcatttcaatttaggcaaagtccatgttccata |
23324405 |
T |
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| Q |
309 |
gatgcaggatacaagtttccatactcactttacattggaaacttgaaattatgatctgcataataccaatcatataagtatcatgtgaataacattcata |
408 |
Q |
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| T |
23324404 |
gatgcaggatacaagtttccatactcactttccattggaaacttgaaattatgatctgcataataccaatcatataagtatcatgtgaataacattcata |
23324305 |
T |
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| Q |
409 |
tcatataatatacaaagaaagatattcacggcgtgtttggtttcgtggcaagaatgacaatctcgtatcccaagtcccatttttccgtggttttcagaag |
508 |
Q |
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| T |
23324304 |
tcatataatatacaaagaaagatattcacgtcgtgtttggtttcgtggcaagaatgacaatctcgtatcccaagtcccatttttccgtggttttcagaag |
23324205 |
T |
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| Q |
509 |
ctaaaaactagagtttgagcaacgtacactgtgagtgcggctatctattgttccaagcatgcacttaacgattgtaacacattatac |
595 |
Q |
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| T |
23324204 |
ctaaaaactagagtttgagcaacgtacactgtgagtgcggctatctattgttccaagcatgcacttaacgattgtaacacattatac |
23324118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 634 - 846
Target Start/End: Complemental strand, 23323206 - 23322993
Alignment:
| Q |
634 |
aaatatttattgaccattttgtattcgtgataatacaatagttgtctaagcgtgtggatgaagttagcagttttcctagttggttgaaggatttgaaact |
733 |
Q |
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| T |
23323206 |
aaatatttattgaccattttgtattcgtgataatacaatagttgtctaagcgtgtggatgaagttagcagttttcctagttggttgaaggatttgaaact |
23323107 |
T |
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| Q |
734 |
tcactcaagagcaatactcatattacctaatataagcaatgg-atcccttaacaagaaagttatatgcactcttatggttattttataaactgattgttt |
832 |
Q |
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| T |
23323106 |
tcactcaagagcaatactcatattacctaatataagcaatggaatcccttaacaagaaagttatatgcactcttatggttattttataaactgattgttt |
23323007 |
T |
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| Q |
833 |
ctttttctaattta |
846 |
Q |
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| T |
23323006 |
ctttttctaattta |
23322993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 594 - 643
Target Start/End: Complemental strand, 23324137 - 23324088
Alignment:
| Q |
594 |
acgattgtaacacattatacatttcataaaattcgattcgaaatatttat |
643 |
Q |
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| T |
23324137 |
acgattgtaacacattatacatttcataaaattcgattcgaaatatttat |
23324088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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