View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120-R-Insertion-7 (Length: 416)
Name: NF3120-R-Insertion-7
Description: NF3120-R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120-R-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Original strand, 25507550 - 25507954
Alignment:
| Q |
10 |
aaacaaagaaagatatacaaacgatctttgaggaaacgacaatagtcataaaaaaccaagacaactggatcaagattttatcaagcaagcaaattcttca |
109 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25507550 |
aaacaaagaaagatatacaa-cgatctttgaggaaacgacaatagtcataaaaaac-aagacaattggatcaagattttatcaagcaagcaaattcttca |
25507647 |
T |
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| Q |
110 |
atcaaaacattgtcaagaaacacatcatttgtgccaagtcattcaagccatcgtttgaacttgatgatcatatgggtgattgatatattcaaatatcaag |
209 |
Q |
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| T |
25507648 |
atcaaaacattgtcaagaaatacatcatttgtgccaagtcattcaagccatcgtttgaacttgatgatcatctgggtgattgatatattcaaatatcaag |
25507747 |
T |
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| Q |
210 |
acaatcttttggataaagtattgaagatcatatgcctagctttgatttggctcagaagctattaagatcttcaaagtactaagaagtgattccattggat |
309 |
Q |
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| T |
25507748 |
acaatcttttggataaagtattgaagatcacatgcctagatttgatttgactcagaagctattaagatcttcaaagtacaaagaagtgattccattggat |
25507847 |
T |
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| Q |
310 |
ttaataaccatcgatcgaaggtatagatgaaccatgtaatatgatatttaaccatcttcatgatagcaattttatatctttattttagccatgtttccac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25507848 |
ttaataaccatcgatcgaaggtatagatgaaccatgtaatatgatatttaaccatcttcatgatagcaattttatatctttattttagccatgtttccac |
25507947 |
T |
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| Q |
410 |
tgatcca |
416 |
Q |
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| T |
25507948 |
tgatcca |
25507954 |
T |
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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 4388218 - 4388317
Alignment:
| Q |
189 |
ttgatatattcaaatatcaagacaatcttttggataaagtattgaagatcatatgcctagctttgatttggctcagaagctattaagatcttcaaagtac |
288 |
Q |
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| T |
4388218 |
ttgatatattcaaatgtgaagacaatcatttggataaagtatttaaaatcacgtgcctagctctgatttggctcgaaatcacttaagatcttcaaagtac |
4388317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 389
Target Start/End: Original strand, 13335229 - 13335321
Alignment:
| Q |
298 |
attccattggatttaataaccatcgatcgaaggtatagatgaa-ccatgtaatatgatatttaaccatcttcatgatagcaattttatatctt |
389 |
Q |
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| T |
13335229 |
attccattggatttaataaccattgattgcaagtgtaaatgaatccatgtaatctgctatttaaccatctccaagatagcaattttatttctt |
13335321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 384
Target Start/End: Original strand, 10497368 - 10497455
Alignment:
| Q |
298 |
attccattggatttaataaccatcgatcgaaggtatagatgaa-ccatgtaatatgatatttaaccatcttcatgatagcaattttat |
384 |
Q |
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| T |
10497368 |
attccattggatataataaccattgattgcaagtgtaaatgaatccatgtaatctgctatttaacgatctccaagatagcaattttat |
10497455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 18263 - 18336
Alignment:
| Q |
228 |
tattgaagatcatatgcctagctttgatttggctcagaagctattaagatcttcaaagtactaagaagtgattc |
301 |
Q |
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| T |
18263 |
tattgaagatcatgtggccatattttatttgactcggaagctattaagatcttcaaagtacaaagaaatgattc |
18336 |
T |
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