View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120-R-Insertion-9 (Length: 62)
Name: NF3120-R-Insertion-9
Description: NF3120-R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120-R-Insertion-9 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 55; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 37704454 - 37704508
Alignment:
| Q |
8 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattccctta |
62 |
Q |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattccctta |
37704508 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 37698636 - 37698690
Alignment:
| Q |
8 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattccctta |
62 |
Q |
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| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattccctta |
37698690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 37437520 - 37437573
Alignment:
| Q |
8 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattccctt |
61 |
Q |
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| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattccctt |
37437573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 37698974 - 37699029
Alignment:
| Q |
9 |
ccaaaaaggttgacttattagattgtttgcaa--attgagtctacgtattccctta |
62 |
Q |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattccctta |
37699029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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