View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3120R-Insertion-4 (Length: 326)
Name: NF3120R-Insertion-4
Description: NF3120R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120R-Insertion-4 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 116 - 326
Target Start/End: Complemental strand, 55978445 - 55978235
Alignment:
| Q |
116 |
ataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttca |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55978445 |
ataggcattactaccacttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttca |
55978346 |
T |
|
| Q |
216 |
tttccatagaagcacttaaactcaaactcgcgtttgtgtactttgtaaaagaaataccttctttagaatactctttgaaagtgttgtcaacaccataact |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55978345 |
tttccatagaagcatttaaactcaaactcgcgtttgtgtactttgcaaaagaaacaccttctttagaatactctttgaaagtgttgtcaacaccataacc |
55978246 |
T |
|
| Q |
316 |
cttaaaatcaa |
326 |
Q |
| |
|
||||||||||| |
|
|
| T |
55978245 |
cttaaaatcaa |
55978235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 55980122 - 55980013
Alignment:
| Q |
15 |
accccttcatctcatcaatctttgaagtagaaaaaggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctgatatcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55980122 |
accccttcatctcatcaatctttgaagtagaaaaaggtaatttcgcaagaatactctggggtaaaaacgaccttttaggtaatttatctctgatatcagg |
55980023 |
T |
|
| Q |
115 |
cataggcatt |
124 |
Q |
| |
|
|||||||||| |
|
|
| T |
55980022 |
cataggcatt |
55980013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 14866223 - 14865939
Alignment:
| Q |
11 |
aataaccccttcatctcatcaatctttgaagtagaaaaaggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctgatat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14866223 |
aatagccccttcatctcatcaatcttggatgtagaaaacggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctaatat |
14866124 |
T |
|
| Q |
111 |
caggcataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctt |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || || | |||||||||||| || |||||| || |||| ||||||||||||||| | | | || |
|
|
| T |
14866123 |
caggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaacccatttttttaccaaactaccactcgcagcattttt |
14866024 |
T |
|
| Q |
211 |
tttcatttccatagaagcacttaaactcaaactcgcgtttgtgtactttgtaaaagaaataccttctttagaatactctttgaaa |
295 |
Q |
| |
|
|||| || || |||||||||||||||| ||||| ||||||||||||||| |||||||| |||||| || ||||||||||||||| |
|
|
| T |
14866023 |
gttcactttcacagaagcacttaaactcgaactcacgtttgtgtactttgcaaaagaaacaccttccttcgaatactctttgaaa |
14865939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 27079595 - 27079719
Alignment:
| Q |
74 |
ggtaaaaacgaccttttaggtaatttatctctgatatcaggcataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaa |
173 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||| ||||||||||| || ||||||| ||||||||| ||||| || ||||||||||| |||| || |
|
|
| T |
27079595 |
ggtaaaaacgaccttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaa |
27079694 |
T |
|
| Q |
174 |
ccgatgttttgaccaaactaccact |
198 |
Q |
| |
|
|| || |||| |||||||| |||| |
|
|
| T |
27079695 |
cccatttttttgccaaactaacact |
27079719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 27065881 - 27065979
Alignment:
| Q |
77 |
aaaaacgaccttttaggtaatttatctctgatatcaggcataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaacc |
175 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| ||||||||||| ||| |||||| |||||||| || ||||| ||||||||||| |||| |||| |
|
|
| T |
27065881 |
aaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaacc |
27065979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University