View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3120_high_14 (Length: 240)

Name: NF3120_high_14
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3120_high_14
NF3120_high_14
[»] chr8 (6 HSPs)
chr8 (19-225)||(24696758-24696964)
chr8 (82-225)||(16052073-16052215)
chr8 (96-160)||(11310067-11310131)
chr8 (102-215)||(28902275-28902387)
chr8 (102-205)||(16054490-16054592)
chr8 (105-162)||(13081754-13081811)
[»] chr2 (3 HSPs)
chr2 (79-218)||(27417056-27417194)
chr2 (176-225)||(18236192-18236241)
chr2 (176-224)||(21505028-21505076)
[»] chr3 (5 HSPs)
chr3 (82-222)||(10341966-10342105)
chr3 (102-162)||(11521403-11521463)
chr3 (173-225)||(19219097-19219149)
chr3 (176-225)||(16970638-16970687)
chr3 (110-162)||(27415405-27415457)
[»] chr4 (7 HSPs)
chr4 (82-162)||(5676438-5676518)
chr4 (105-219)||(15192385-15192498)
chr4 (105-162)||(27303015-27303072)
chr4 (91-162)||(18898220-18898291)
chr4 (176-225)||(7024108-7024157)
chr4 (173-205)||(5906649-5906681)
chr4 (173-225)||(31859787-31859839)
[»] chr1 (7 HSPs)
chr1 (89-225)||(11769795-11769932)
chr1 (173-225)||(25494375-25494427)
chr1 (177-225)||(18300893-18300941)
chr1 (82-162)||(23223652-23223732)
chr1 (173-225)||(25727795-25727847)
chr1 (173-225)||(25736203-25736255)
chr1 (173-205)||(30675680-30675712)
[»] scaffold0386 (2 HSPs)
scaffold0386 (83-162)||(8506-8585)
scaffold0386 (106-162)||(11619-11675)
[»] chr5 (7 HSPs)
chr5 (176-225)||(16634223-16634272)
chr5 (102-162)||(25680825-25680885)
chr5 (175-225)||(18178278-18178328)
chr5 (176-225)||(11274219-11274268)
chr5 (173-224)||(19763772-19763823)
chr5 (175-225)||(16622565-16622614)
chr5 (173-225)||(7742756-7742808)
[»] chr7 (3 HSPs)
chr7 (102-205)||(21471992-21472093)
chr7 (173-225)||(29544696-29544748)
chr7 (179-225)||(12358655-12358701)
[»] chr6 (5 HSPs)
chr6 (173-225)||(26499733-26499785)
chr6 (90-162)||(17860253-17860325)
chr6 (173-225)||(30355493-30355545)
chr6 (173-230)||(33638257-33638314)
chr6 (173-225)||(33638391-33638443)
[»] scaffold0282 (1 HSPs)
scaffold0282 (115-162)||(22443-22490)
[»] scaffold0171 (2 HSPs)
scaffold0171 (96-225)||(21574-21702)
scaffold0171 (173-219)||(6377-6423)
[»] scaffold0362 (1 HSPs)
scaffold0362 (105-162)||(7857-7914)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 24696964 - 24696758
Alignment:
Q  19 catgggccagtgacaacactgcctcatgcgcaagaggcgcatggccagtgcgcaggaggcggtagcccctgtgtgcaaattcatgcgttttcgtcccgtt 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24696964 catgggccagtgacaacactgccttatgcgcaagaggcgcatggccggtgcgcaggaggcggtagcccctgtgtgcaaattcatgcgtttttgtcccgtt 24696865  T
Q  119 ttcaatcgttcttccgtctagaaaatcctagaaacttgaaatgannnnnnnnnnactttgtattttcttcaaaaaccttctaagaacaagtggtcttcaa 218  Q
    ||| |||||| |||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||    
T  24696864 ttcgatcgtttttccgtctagaaaatcctagaaacttgaaatgaatttttttttactttgtattttcttcaaaaaccttctaagaacaagtggtcttcaa 24696765  T
Q  219 tcttcat 225  Q
    |||||||    
T  24696764 tcttcat 24696758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 16052073 - 16052215
Alignment:
Q  82 agcccctgtgtgcaaattcatgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatgannnnnnnnnnactttgtat 181  Q
    ||||| |||||||||||| ||| | |||| |||||||||| || ||||||||||||||||| ||| || ||||||||||||          | |||||||    
T  16052073 agcccatgtgtgcaaattgatgagctttcatcccgttttcgattgttcttccgtctagaaactccaaggaacttgaaatga-attttcttcattttgtat 16052171  T
Q  182 tttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    | |||||||||||||||||||||  | ||||||| |||||||||    
T  16052172 tgtcttcaaaaaccttctaagaatcattggtctttaatcttcat 16052215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 11310067 - 11310131
Alignment:
Q  96 aattcatgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaat 160  Q
    ||||| ||||||||| | |||||||| |||||||||||||||||||| |||||| ||||||||||    
T  11310067 aattcttgcgttttccttccgttttcgatcgttcttccgtctagaaactcctaggaacttgaaat 11310131  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 28902387 - 28902275
Alignment:
Q  102 tgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatgannnnnnnnnnactttgtattttcttcaaaaaccttctaa 201  Q
    |||||||||||||||||||||||||||||| |||||  ||| |||||| ||||| ||||||          |||||||||| ||||||| ||||||||||    
T  28902387 tgcgttttcgtcccgttttcaatcgttctttcgtctgaaaactcctaggaacttaaaatga-attttattcactttgtattgtcttcaataaccttctaa 28902289  T
Q  202 gaacaagtggtctt 215  Q
    |||| | |||||||    
T  28902288 gaaccattggtctt 28902275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 16054592 - 16054490
Alignment:
Q  102 tgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatgannnnnnnnnnactttgtattttcttcaaaaaccttctaa 201  Q
    ||||||||| |||||||||| |||||||||  |||| |||| |||||| ||||||||||||          |||||||||||||||||| ||||||||||    
T  16054592 tgcgttttcttcccgttttcgatcgttcttttgtctggaaactcctaggaacttgaaatga-attttcttcactttgtattttcttcaacaaccttctaa 16054494  T
Q  202 gaac 205  Q
    ||||    
T  16054493 gaac 16054490  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 13081754 - 13081811
Alignment:
Q  105 gttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    |||||| |||||||||  |||||||||  ||||||||| || ||||||||||||||||    
T  13081754 gttttcttcccgtttttgatcgttcttttgtctagaaactcatagaaacttgaaatga 13081811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 27417056 - 27417194
Alignment:
Q  79 ggtagcccctgtgtgcaaattcatgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatgannnnnnnnnnactttg 178  Q
    |||||||| ||||||| ||||| || ||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||          ||||||    
T  27417056 ggtagcccatgtgtgcgaattcttgagttttcgtcccgttttcaatcgttcttccgtctggaaactccttggaacttgaaatga-attttcttcactttg 27417154  T
Q  179 tattttcttcaaaaaccttctaagaacaagtggtcttcaa 218  Q
    |||| | |||||||||||||| ||||| | ||||||||||    
T  27417155 tattgttttcaaaaaccttcttagaaccattggtcttcaa 27417194  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 18236192 - 18236241
Alignment:
Q  176 ttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    ||||||| ||||||| |||||||||||||| | ||| |||||||||||||    
T  18236192 ttgtattgtcttcaacaaccttctaagaaccattggccttcaatcttcat 18236241  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 21505028 - 21505076
Alignment:
Q  176 ttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttca 224  Q
    ||||||| |||||||||||||||| ||||| | |||||||||| |||||    
T  21505028 ttgtattgtcttcaaaaaccttctcagaaccattggtcttcaaacttca 21505076  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 10342105 - 10341966
Alignment:
Q  82 agcccctgtgtgcaaattcatgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatgannnnnnnnnnactttgtat 181  Q
    ||||||| | ||| || ||||| ||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||          |||||||||    
T  10342105 agcccctatatgcgaaatcatgtgttttctccccgttttcgatcgttcttccgtctagaaactcctaggaacttgaaatga-gtttttctcactttgtat 10342007  T
Q  182 tttcttcaaaaaccttctaagaacaagtggtcttcaatctt 222  Q
    | |||||||||||||||||||||| | || |||||||||||    
T  10342006 tgtcttcaaaaaccttctaagaaccactgatcttcaatctt 10341966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 11521463 - 11521403
Alignment:
Q  102 tgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    ||||||||| |||||||||| |||||||||||||||  ||| |||||| ||||||||||||    
T  11521463 tgcgttttcttcccgttttcgatcgttcttccgtctgaaaactcctaggaacttgaaatga 11521403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 19219097 - 19219149
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||||| |||||||||||||||||||||| | || ||||||||||||||    
T  19219097 actttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcat 19219149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 16970687 - 16970638
Alignment:
Q  176 ttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    ||||||||||||||||||||||||||||||   |||||||||| ||||||    
T  16970687 ttgtattttcttcaaaaaccttctaagaaccgttggtcttcaaacttcat 16970638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 27415457 - 27415405
Alignment:
Q  110 cgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    |||||||||||| ||||||||| ||||| |||| |||||| || |||||||||    
T  27415457 cgtcccgttttcgatcgttctttcgtcttgaaactcctaggaagttgaaatga 27415405  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 5676518 - 5676438
Alignment:
Q  82 agcccctgtgtgcaaattcatgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    ||||| ||||||  ||||| |||||||||||||||||||| || ||||||||||||||||| |||||| |||| |||||||    
T  5676518 agcccgtgtgtgtgaattcttgcgttttcgtcccgttttcgattgttcttccgtctagaaactcctagtaactcgaaatga 5676438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 15192498 - 15192385
Alignment:
Q  105 gttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatgannnnnnnnnnactttgtattttcttcaaaaaccttctaagaa 204  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||          |||||| ||| ||||||| |||||||||||||    
T  15192498 gttttcgtcccgttttcgatcgttcttccgtctaaaaactcctaggaacttgaaatga-attgtcttcactttgaattgtcttcaacaaccttctaagaa 15192400  T
Q  205 caagtggtcttcaat 219  Q
    | | |||||||||||    
T  15192399 ccattggtcttcaat 15192385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 27303072 - 27303015
Alignment:
Q  105 gttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    ||||||||||||||||| |||||||||||||||  ||| |||||| ||||| ||||||    
T  27303072 gttttcgtcccgttttcgatcgttcttccgtctgaaaactcctaggaacttaaaatga 27303015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 18898291 - 18898220
Alignment:
Q  91 gtgcaaattcatgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    |||||||||| ||| ||||  || ||||||| ||||||||| |||||  |||||||||| ||||||||||||    
T  18898291 gtgcaaattcttgcatttttctctcgttttcgatcgttcttacgtctgaaaaatcctaggaacttgaaatga 18898220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 7024108 - 7024157
Alignment:
Q  176 ttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    ||||||| ||||||| || ||||||||||| | |||||||||||||||||    
T  7024108 ttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcat 7024157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 5906649 - 5906681
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaac 205  Q
    |||||||||| ||||||||||||||||||||||    
T  5906649 actttgtattatcttcaaaaaccttctaagaac 5906681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 31859787 - 31859839
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||||| |||||||| ||||||||||||| | || |||||||| |||||    
T  31859787 actttgtattgtcttcaaataccttctaagaaccattgatcttcaatattcat 31859839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 11769795 - 11769932
Alignment:
Q  89 gtgtgcaaattcatgcgttttcgtcccgttttca--atcgttcttccgtctagaaaatcctagaaacttgaaatgannnnnnnnnnactttgtattttct 186  Q
    |||||| ||||| |||||||||||||| ||||    ||||||||||||||| |||| || ||| ||||||||||||          |||||||||| |||    
T  11769795 gtgtgcgaattcttgcgttttcgtcccattttttttatcgttcttccgtctggaaactcataggaacttgaaatgaattttcttc-actttgtattgtct 11769893  T
Q  187 tcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  11769894 tcaaaaaccttctaagaaccattggtcttcaatcttcat 11769932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 25494375 - 25494427
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||||||||    
T  25494375 actttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcat 25494427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 18300893 - 18300941
Alignment:
Q  177 tgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||| |||||||||||||||||||||| | |||| || |||||||||    
T  18300893 tgtattgtcttcaaaaaccttctaagaaccattggtatttaatcttcat 18300941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 23223732 - 23223652
Alignment:
Q  82 agcccctgtgtgcaaattcatgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    ||||||||| ||  ||||| ||| |||||||||||||||| |||||||   ||  |||||| |||||| ||||||||||||    
T  23223732 agcccctgtatgtgaattcttgcattttcgtcccgttttcgatcgttcaatcgattagaaactcctaggaacttgaaatga 23223652  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 25727795 - 25727847
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||| ||| ||||||||||||||| |||||| | || ||||||||||||||    
T  25727795 actttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcat 25727847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 25736203 - 25736255
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||| ||| ||||||||||||||| |||||| | || ||||||||||||||    
T  25736203 actttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcat 25736255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 30675712 - 30675680
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaac 205  Q
    |||||||||| ||||||||||||||||||||||    
T  30675712 actttgtattatcttcaaaaaccttctaagaac 30675680  T

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Target: scaffold0386 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 8506 - 8585
Alignment:
Q  83 gcccctgtgtgcaaattcatgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    |||||||||||  ||||| |||||||||||||||||||| ||||||||||||| |  ||| |||||| |||| |||||||    
T  8506 gcccctgtgtgtgaattcttgcgttttcgtcccgttttcgatcgttcttccgtttgaaaattcctaggaactcgaaatga 8585  T

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Target: scaffold0386; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 11619 - 11675
Alignment:
Q  106 ttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    ||||||||||| |||| ||||||||||||||| |||| |||||| |||| |||||||    
T  11619 ttttcgtcccgatttcgatcgttcttccgtctggaaattcctaggaactcgaaatga 11675  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 16634272 - 16634223
Alignment:
Q  176 ttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||||||||||||||||||||||||| | |||||||||| ||||||    
T  16634272 ttgtattttcttcaaaaaccttctaagaaccattggtcttcaaacttcat 16634223  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 25680885 - 25680825
Alignment:
Q  102 tgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    |||||||||||||||||||| || ||| |||||||| |||| |||||||||| ||||||||    
T  25680885 tgcgttttcgtcccgttttcgattgtttttccgtctggaaactcctagaaacctgaaatga 25680825  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 18178328 - 18178278
Alignment:
Q  175 tttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||| |||||||| |||||| |||||||| |||||||||||||||||    
T  18178328 tttgtattatcttcaaagaccttccaagaacaattggtcttcaatcttcat 18178278  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 11274219 - 11274268
Alignment:
Q  176 ttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    ||||||| |||||||| ||||||||||||| | |||||||||||||||||    
T  11274219 ttgtattgtcttcaaagaccttctaagaaccattggtcttcaatcttcat 11274268  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 19763772 - 19763823
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttca 224  Q
    |||||||||| ||||||||||||||||||||||   || |||||||||||||    
T  19763772 actttgtattatcttcaaaaaccttctaagaacccttgatcttcaatcttca 19763823  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 16622565 - 16622614
Alignment:
Q  175 tttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||| ||||||||| |||||||||||| | |||||||||||||||||    
T  16622565 tttgtattgtcttcaaaa-ccttctaagaaccactggtcttcaatcttcat 16622614  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 7742756 - 7742808
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||||| |||||||| ||||||||||||| | || |||||| |||||||    
T  7742756 actttgtattgtcttcaaagaccttctaagaaccattgatcttcagtcttcat 7742808  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 21472093 - 21471992
Alignment:
Q  102 tgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatgannnnnnnnnnactttgtattttcttcaaaaaccttctaa 201  Q
    ||||||||||||| |||||| ||||||||||||| |  ||| |||||| ||||||||||||          |||||||||||||||||| ||||||||||    
T  21472093 tgcgttttcgtcctgttttcgatcgttcttccgtatgaaaactcctaggaacttgaaatga--atttcgtcactttgtattttcttcaataaccttctaa 21471996  T
Q  202 gaac 205  Q
    ||||    
T  21471995 gaac 21471992  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 29544748 - 29544696
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||||| |||||||||||||||||||||  | || ||||||||||||||    
T  29544748 actttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatcttcat 29544696  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 12358655 - 12358701
Alignment:
Q  179 tattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||| |||||||||||||||||||||| | || ||||||||||||||    
T  12358655 tattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcat 12358701  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 26499733 - 26499785
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||||| |||||||||||||||||||||| | || ||||||||||||||    
T  26499733 actttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcat 26499785  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 17860253 - 17860325
Alignment:
Q  90 tgtgcaaattcatgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    ||||||| ||| |||||||||  || |||||||||||||||| || || |||| |||||| ||||||||||||    
T  17860253 tgtgcaatttcttgcgttttcaccctgttttcaatcgttctttcgactggaaactcctaggaacttgaaatga 17860325  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 30355545 - 30355493
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    ||||| |||| |||||||||||||||||||||| | || ||||||||||||||    
T  30355545 actttttattgtcttcaaaaaccttctaagaacgattgatcttcaatcttcat 30355493  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 33638314 - 33638257
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcatctcac 230  Q
    |||||||||| |||||||| ||||| ||||||| | || |||||||||||||| ||||    
T  33638314 actttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcatatcac 33638257  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 33638391 - 33638443
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||||| |||||||| ||||| ||||||| | || ||||||||||||||    
T  33638391 actttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcat 33638443  T

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Target: scaffold0282 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 22443 - 22490
Alignment:
Q  115 cgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  22443 cgttttcaatcgttcttccctctggaaaatcctaggaacttgaaatga 22490  T

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Target: scaffold0171 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 21702 - 21574
Alignment:
Q  96 aattcatgcgttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatgannnnnnnnnnactttgtattttcttcaaaaacc 195  Q
    ||||| || |||||||||  |||||| || ||| ||| ||||||||| ||||| |||||||||||||          |||||||||| |||| |||||||    
T  21702 aattcttgtgttttcgtcttgttttctatagttgttctgtctagaaactcctataaacttgaaatgaatattctta-actttgtattgtctttaaaaacc 21604  T
Q  196 ttctaagaacaagtggtcttcaatcttcat 225  Q
    |||||||||| | || ||||||||||||||    
T  21603 ttctaagaaccattgatcttcaatcttcat 21574  T

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Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 6423 - 6377
Alignment:
Q  173 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaat 219  Q
    ||||||||||||||||||||| |||||| |||| | |||||||||||    
T  6423 actttgtattttcttcaaaaatcttctaggaaccattggtcttcaat 6377  T

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Target: scaffold0362 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 7914 - 7857
Alignment:
Q  105 gttttcgtcccgttttcaatcgttcttccgtctagaaaatcctagaaacttgaaatga 162  Q
    |||||||||| |||||| ||| |||||||||||  ||| |||||| ||||||||||||    
T  7914 gttttcgtccagttttcgatcattcttccgtctgaaaactcctaggaacttgaaatga 7857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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