View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120_high_18 (Length: 237)
Name: NF3120_high_18
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 392133 - 392334
Alignment:
| Q |
20 |
ccataattcctagcgcaaaaatgatgtctgtcatctccaaatctacttggttagctagcatctttcgaaaatcttgtacagtttttccaatgaagctacc |
119 |
Q |
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| T |
392133 |
ccataattcctagcgcaaaaatgatgtccgtcgtctccaaatctacttggttagctagcatctttcgaaaatcttgtacagtttttccaatgaagctacc |
392232 |
T |
|
| Q |
120 |
tgtaaaaaatagaaagcagaaaatggaacacatcgatgatggttcttgtaaaattcctcctcgatgattggatgtttccacaccctacttcattatgatt |
219 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
392233 |
tgtaaaaaatagaaagcagaaaatgaaacacatcaatgatggttctagtaaaattcctcctcgatgattggatgtttccacaccctacttcattatgatt |
392332 |
T |
|
| Q |
220 |
at |
221 |
Q |
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|| |
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| T |
392333 |
at |
392334 |
T |
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