View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120_high_4 (Length: 323)
Name: NF3120_high_4
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 53174843 - 53175081
Alignment:
| Q |
9 |
cagaacctgtggtggatagttcaaaaacaaagtaaagtccattgtcaatacaacatcctagaagagataaaacattggaatgacgaacatgaccaattgt |
108 |
Q |
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| T |
53174843 |
cagaaccagtggtggatagttcaaaaacaaagtaaagtccattgtcaatacaacatcctagaagagataaaacattggaatgacgaacatgaccaattgt |
53174942 |
T |
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| Q |
109 |
tccaatctctgtcaaaaactctttctcttttctttcatcctttgaagctcttgttaatctcttcacagcaatttcttcaccatttttcaatgttcccttg |
208 |
Q |
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| T |
53174943 |
tccaatctctgtcaaaaactctttctcttttctttcatcctttgaagctcttgttaatctcttcacagcaatttcttcaccatttttcaatgttcccttg |
53175042 |
T |
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| Q |
209 |
taaacctcagcataaccaccttttccaaccatattttct |
247 |
Q |
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| T |
53175043 |
taaacctcagcataaccaccttttccaaccatattttct |
53175081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 53175112 - 53175148
Alignment:
| Q |
271 |
cttttattcccaaaaatttcatgaatattatactatg |
307 |
Q |
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| T |
53175112 |
cttttattcccaaaaatttcatgaatattatactatg |
53175148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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