View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120_low_1 (Length: 582)
Name: NF3120_low_1
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 108 - 400
Target Start/End: Original strand, 11226960 - 11227252
Alignment:
| Q |
108 |
tcaagtgatgagatgtattatgggaaattggttgacatcatagaacttgattactatggtaagctgagggttgtgcttttcaagtgtgtttgggtagata |
207 |
Q |
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| T |
11226960 |
tcaagtgatgagatgtattatgggaaattggttgacatcatagaacttgattactatggtaagctgagggttgtgcttttcaagtgtgtttgggtagata |
11227059 |
T |
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| Q |
208 |
ctagacctaacaagggaattaagattgatcaatttggaataccaagtgtgaatttctctcgcttgatacacactggtgtgaatgaagtagatgaatcatt |
307 |
Q |
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| T |
11227060 |
ctagacctaacaagggaattaagattgatcaatttggaataccaagtgtgaatttctctagcttgatacacactggtgtgaatgaagtagatgaaccatt |
11227159 |
T |
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| Q |
308 |
catccttgcaactgatgctagaatggtatattatgttgatgatccatttgaagaaggttggtcttgtgtaagtcatatgaagcctagagacat |
400 |
Q |
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| T |
11227160 |
catccttgcaactgatgctagaatggtatattatgttgatgatccatttgaagaaggttggtcttgtgtaagtcatatgaagcctagagacat |
11227252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 461 - 565
Target Start/End: Original strand, 11227252 - 11227356
Alignment:
| Q |
461 |
tttttgtgagcaaactgtggagaacatagaagacttgcaattactgcaagaagatgacaatgaacaagagccaaatgtcaatgaagaagaacaagaacct |
560 |
Q |
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| T |
11227252 |
tttttgtgagcaaactgtggagaacatagaagacttgcaattactgcaagaagatgacaatgaacaagagccaaatatcaatgaagaagaacaagaacct |
11227351 |
T |
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| Q |
561 |
gatga |
565 |
Q |
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| T |
11227352 |
gatga |
11227356 |
T |
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