View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120_low_13 (Length: 248)
Name: NF3120_low_13
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 32526877 - 32526725
Alignment:
| Q |
71 |
aagtagtaaatagatttaatgaaaggtaaatatgaagnnnnnnnnntc-atccccaattgatgtgtttcttttatatattgannnnnnnnnnaacaagcc |
169 |
Q |
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| T |
32526877 |
aagtagtaaatagatttaatgaaaggtaaatatgaaggaaaaaaaatccatccccaattgatgtgtttcttttatatattgatattttttttaataagcc |
32526778 |
T |
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| Q |
170 |
aaaatg-aatatgatattagacgggagtgagacaccgcatacaaggtgtgcaa |
221 |
Q |
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| T |
32526777 |
aaaatggaatatgatattagacgggagtgagacaccgcgtacaaggtgtgcaa |
32526725 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 32518404 - 32518371
Alignment:
| Q |
67 |
gataaagtagtaaatagatttaatgaaaggtaaa |
100 |
Q |
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| T |
32518404 |
gataaagtagtaaatagattgaatgaaaggtaaa |
32518371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 26518023 - 26517963
Alignment:
| Q |
162 |
aacaagccaaaatgaa-tatgatattagacgggagtgagacaccgcatacaaggtgtgcaa |
221 |
Q |
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|||||| ||||||||| |||||||||| ||| |||||| ||||||| ||||||||||||| |
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| T |
26518023 |
aacaagtcaaaatgaaatatgatattaaacgagagtgaaacaccgcgcacaaggtgtgcaa |
26517963 |
T |
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