View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120_low_17 (Length: 239)
Name: NF3120_low_17
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32527217 - 32527437
Alignment:
| Q |
1 |
ttttgatatgaattttaaagtagattcaatatagttagaatatgaacaatataatcctcattcaactatggagattcctcaactgcaaactttttcaaag |
100 |
Q |
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| T |
32527217 |
ttttgatgtgaattttaaagtagattcaatatagttagaatatgaacaaaataatcctcattcaactacggagattcctcaactgcaaactttttcaaag |
32527316 |
T |
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| Q |
101 |
tgcggatgagagggaagcggtgtagttcatttttctctcccttttcttccggtaaaattaaatgaaaagaaaacctttattttgttggtttcgcagaata |
200 |
Q |
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| T |
32527317 |
tgcggatgagagggaagcggtgcagttca-ttttctctcccttttcttccggtaaaattaaatgaaaagaaaacctttattttgttggtttcgcagaata |
32527415 |
T |
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| Q |
201 |
tcatctgatctgagggggatca |
222 |
Q |
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|||| ||||||||||||||||| |
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| T |
32527416 |
tcatatgatctgagggggatca |
32527437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 32518686 - 32518892
Alignment:
| Q |
1 |
ttttgatatgaattttaaagtagattcaatatagttagaatatgaacaatataatcctcattcaactatggagattc-----ctcaactgcaaacttttt |
95 |
Q |
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| T |
32518686 |
ttttgatataaattttaaagtagattcaataaaattagaatatgaacaacataatcctcattcaactaccgagaaccgaacccttaactgcaaacttttt |
32518785 |
T |
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| Q |
96 |
caaagtgcggatgagagggaagcggtgtagttcatttttctctcccttttcttccggtaaaattaaatgaaaagaaaacctttattttgttggtttcgca |
195 |
Q |
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| T |
32518786 |
ccaactacggatgatagggaagtggtgtagtttattttt-tctcccttttcttccagtaaaattaaatgaaaag-caacattttttttgttggttgcgcg |
32518883 |
T |
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| Q |
196 |
gaatatcat |
204 |
Q |
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| T |
32518884 |
gaatatcat |
32518892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 32524238 - 32524444
Alignment:
| Q |
11 |
aattttaaagtagattcaatatagttagaatatgaacaatataatcctcattcaactatggagattcctcaactgcaaactttttcaaagtgcggatgag |
110 |
Q |
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|||| ||||||||||||| |||| ||| |||| ||||||| ||||||| ||| ||||| ||||||||||||||||||||||||| || ||||||||| |
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| T |
32524238 |
aattataaagtagattca-tataattacaatacgaacaatgtaatcctaattaaactaccaagattcctcaactgcaaactttttccaattgcggatgac |
32524336 |
T |
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| Q |
111 |
agggaagcggtgtagttcatttttctctcccttttcttccggtaaaattaaatgaaaagaaaacctttattttgttggtttcgcagaatatcatctgatc |
210 |
Q |
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| T |
32524337 |
a-ggaagcggtgtagttcattttt-tctcccttttcctccggtaaaatttaatgaaaag-caacattttatttgtttgtatcgcggaatatcatcttatc |
32524433 |
T |
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| Q |
211 |
tgagggggatc |
221 |
Q |
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| T |
32524434 |
tgaggtggatc |
32524444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 32523847 - 32524002
Alignment:
| Q |
11 |
aattttaaagtagattcaatatagttagaatatgaacaatataatcctcattcaactatggagattcctcaactgcaaactttttcaaagtgcggatgag |
110 |
Q |
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|||||||||||||||| | |||| ||| |||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||| || ||| ||||| |
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| T |
32523847 |
aattttaaagtagattta-tataattacaatatgaacaatttaatcctaattcaactaccaagattcctcaagtgcaaactttttccaattgcagatgac |
32523945 |
T |
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| Q |
111 |
agggaagcggtgtagttcatttttctctcccttttcttccggtaaaattaaatgaaaag |
169 |
Q |
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| T |
32523946 |
agggaagcggtgtagtttatttt--tctccctttttttccgataaaattaaatgaaaag |
32524002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 32524504 - 32524564
Alignment:
| Q |
145 |
tcttccggtaaaattaaatgaaaagaaaacctttattttgttggtttcgcagaatatcatct |
206 |
Q |
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| T |
32524504 |
tcttccggtaaaattaaatgaaaag-caacatttattttattggtttcgctaaatatcatct |
32524564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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