View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3120_low_18 (Length: 237)
Name: NF3120_low_18
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 36334082 - 36333918
Alignment:
| Q |
57 |
catatctatgtagttcaatacttggcgtaagtgattctaaattcctaattcagttattgatttcaaaaagtagcactaagtctcataatataatgtcaag |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36334082 |
catatctatgtagttcaatacttggcgtaagtgattctaaattcctaattcagttattgatttcaaaaagtagcactaagtctcataatataatgtcaag |
36333983 |
T |
|
| Q |
157 |
catgtgcatgattcagttttccatcttgctgtggcatacaattggaattgaaacaaggaaataat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36333982 |
catgtgcatgattcagttttccatcttgctgtggcatacaattggaattgaaacaaggaaataat |
36333918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36334152 - 36334110
Alignment:
| Q |
1 |
caagtaaagctcataataatatagaaaacattgatcagttcac |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36334152 |
caagtaaagctcataataatatagaaaacattgatcagttcac |
36334110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 10207529 - 10207482
Alignment:
| Q |
112 |
attgatttcaaaaagtagcactaagtctcataatataatgtcaagcat |
159 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| ||| |||| |
|
|
| T |
10207529 |
attgatttcaaaaagtagcagtaagtctcattatataatatcatgcat |
10207482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University