View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120_low_3 (Length: 361)
Name: NF3120_low_3
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 7883282 - 7883615
Alignment:
| Q |
10 |
acatcatcaagagtggagaaccagctttcagtgtgctagtatcaagattcttgcttggagaagcattccctatgccagtttacctctcattgttgccaat |
109 |
Q |
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| T |
7883282 |
acatcatcaagagtggagaaccagctttcagtgtgctagtatcaagattcttgcttggagaagcattccctatgccagtttacctctcattgttgccaat |
7883381 |
T |
|
| Q |
110 |
aattggtggttgtgcactagctgctgtaacagaactcaatttcaatatgactggtaagaataagatcacaaacaattattcacataaatataaagttcaa |
209 |
Q |
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| T |
7883382 |
aattggtggttgtgcactagctgctgtaacagaactcaatttcaatatgattggtaggaataagatcacaaacaattattcacataaatataaagttcaa |
7883481 |
T |
|
| Q |
210 |
tatcaatactctaaatgaatcaattcttgtttcaggatttatgggagctatgatatcaaatttggcatttgtatttaggaatatattctcaaagaaagga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7883482 |
tatcaatactctaaatgaatcaattcttgtttcaggatttatgggagctatgatatcaaatttggcatttgtatttaggaatatattctcaaagaaagga |
7883581 |
T |
|
| Q |
310 |
atgaatggaatgagtgttagtggaatgaactatt |
343 |
Q |
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| T |
7883582 |
atgaatggaatgagtgttagtggaatgaactatt |
7883615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 54985719 - 54985877
Alignment:
| Q |
10 |
acatcatcaagagtggagaaccagctttcagtgtgctagtatcaagattcttgcttggagaagcattccctatgccagtttacctctcattgttgccaat |
109 |
Q |
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| T |
54985719 |
acataatcaaaagtggagaacctgctttcagtgttcttgtatcaaaattcttgcttggtgaagcgttccctttacaagtttacctttcactactaccaat |
54985818 |
T |
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| Q |
110 |
aattggtggttgtgcactagctgctgtaacagaactcaatttcaatatgactggtaaga |
168 |
Q |
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| T |
54985819 |
tattggaggttgtgcacttgctgctgtcacagaacttaatttcaatatgattggtaaga |
54985877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 341
Target Start/End: Original strand, 54985998 - 54986102
Alignment:
| Q |
237 |
tgtttcaggatttatgggagctatgatatcaaatttggcatttgtatttaggaatatattctcaaagaaaggaatgaatggaatgagtgttagtggaatg |
336 |
Q |
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||||||||| |||||||| ||||||||||| ||| |||| ||||| ||||||||||||||||||||||| |||||||| |||||| ||||||||||||| |
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| T |
54985998 |
tgtttcagggtttatgggggctatgatatccaatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatg |
54986097 |
T |
|
| Q |
337 |
aacta |
341 |
Q |
| |
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||||| |
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| T |
54986098 |
aacta |
54986102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 18396163 - 18396224
Alignment:
| Q |
105 |
ccaataattggtggttgtgcactagctgctgtaacagaactcaatttcaatatgactggtaa |
166 |
Q |
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| T |
18396163 |
ccaatcattggtggatgtgcacttgctgctgtgactgaactcaatttcaatatgattggtaa |
18396224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 338
Target Start/End: Original strand, 18396534 - 18396632
Alignment:
| Q |
240 |
ttcaggatttatgggagctatgatatcaaatttggcatttgtatttaggaatatattctcaaagaaaggaatgaatggaatgagtgttagtggaatgaa |
338 |
Q |
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|||||| |||||||| ||||||||||||||| |||||||||| || | || || ||||| || || || ||||| |||| | ||||||||||||||| |
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| T |
18396534 |
ttcaggttttatgggggctatgatatcaaatctggcatttgtgttccgcaacatcttctcgaaaaaggggatgaagggaaagtctgttagtggaatgaa |
18396632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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