View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120_low_6 (Length: 319)
Name: NF3120_low_6
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 4702550 - 4702400
Alignment:
| Q |
13 |
cagagactagtggtggtatataatgtaacacatattataatattcaatttaactttgattaatttgctctaacaaatcaaatgagagtataaggagtcac |
112 |
Q |
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| T |
4702550 |
cagagactagtggtggtatataatgtaacacatattataatattcaatttaactttgattaatttgctctaacaaatcaaatgagagtataaggagtcac |
4702451 |
T |
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| Q |
113 |
tgcgggaaagaaataaattgtagagattatatttcaatagaacaattataa |
163 |
Q |
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| T |
4702450 |
tgcaggaaagaaataaattgtagagattatatttcaatagaacaattataa |
4702400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 4702390 - 4702357
Alignment:
| Q |
267 |
ttcttaaccattcaatttattcggaagttccagc |
300 |
Q |
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| T |
4702390 |
ttcttaaccattcaatttattcggaagttccagc |
4702357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 4705709 - 4705677
Alignment:
| Q |
170 |
gactaaaataattatgaaaaaagttccaatatt |
202 |
Q |
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| T |
4705709 |
gactaaaataattatggaaaaagttccaatatt |
4705677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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