View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120_low_9 (Length: 305)
Name: NF3120_low_9
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 24462257 - 24462529
Alignment:
| Q |
15 |
cacagattccaacactgagttccatccacaatgagtcagaaatgcaccaatagctctatgtctcaatatcatcacttgtggggcccagcctctaataaca |
114 |
Q |
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| T |
24462257 |
cacagattccaacactgagttccatccacaatgagtcaaaaatgcaccaacagctctatgtctcaatatcatcacttgtggggcccagcctctaataaca |
24462356 |
T |
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| Q |
115 |
agacctctaccaagaaaagcatcttcaaaatccaacccttcannnnnnnnnnnnnnnnnnnnnattgaccatataaaatggactccactttttaacaacc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24462357 |
agacctctaccaagaaaagcatcttcaaaatccaacccttcattttcattttttgtttcttttattgaccatataaaatggactccactttttaacaacc |
24462456 |
T |
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| Q |
215 |
cagatgcaatagccaccgtttgatccttgttgagaatagtttggcttccaaaacacacatacaccactttctt |
287 |
Q |
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| T |
24462457 |
cagatgcaatagccaccgtttgatccttgttgagaatagtttggcttccaaaacacacatacaccaatttctt |
24462529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 20156865 - 20156941
Alignment:
| Q |
34 |
ttccatccacaatgagtcagaaatgcaccaatagctctatgtctcaatatcatcacttgtggggcccagcctctaat |
110 |
Q |
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| T |
20156865 |
ttccatccacaatgtgtcaaaaatgcacctattgctttatgtgacaatatcaaaacttgtggagcccaacctctaat |
20156941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 18989568 - 18989525
Alignment:
| Q |
32 |
agttccatccacaatgagtcagaaatgcaccaatagctctatgt |
75 |
Q |
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| T |
18989568 |
agttccatccacaatgagtcacaaatgctccaatagctttatgt |
18989525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 11019145 - 11019104
Alignment:
| Q |
21 |
ttccaacactgagttccatccacaatgagtcagaaatgcacc |
62 |
Q |
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| T |
11019145 |
ttccaacacggagttccatccacaatgagtcacaaatccacc |
11019104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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