View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_high_10 (Length: 504)

Name: NF3121_high_10
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_high_10
NF3121_high_10
[»] chr7 (3 HSPs)
chr7 (181-494)||(3545878-3546191)
chr7 (19-183)||(3553473-3553637)
chr7 (388-470)||(24864999-24865081)
[»] chr5 (2 HSPs)
chr5 (388-461)||(3421331-3421404)
chr5 (404-466)||(21118553-21118615)
[»] chr3 (2 HSPs)
chr3 (404-467)||(494269-494332)
chr3 (423-470)||(7183890-7183937)
[»] chr8 (1 HSPs)
chr8 (29-123)||(10252634-10252728)
[»] chr4 (1 HSPs)
chr4 (404-466)||(3927602-3927664)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 181 - 494
Target Start/End: Complemental strand, 3546191 - 3545878
Alignment:
Q  181 cattcaatactcccttnnnnnnntatccaatattaattacgatcatgatctaacaaccacatgttgatatttnnnnnnnnnnnnn-tgaaatttgattga 279  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||    
T  3546191 cattcaatactcccttaaaaaaatatccaatattaattacgatcatgatctaacaaccacatgttgatatttaaaaaaaataaatatgaaatttgattga 3546092  T
Q  280 aagtctatatataattatatcgatacataaaatttgcatccacatatataagaacggaatatttgcaacgggcgtggtgaaacatatttaacggattttt 379  Q
    || ||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||     
T  3546091 aaatctgtatacaattatatcgatacataaaatttgcatccacatatataagcacggaatatttgcaacgggcgtggtgaa-catatttaacggattttg 3545993  T
Q  380 gcatatttaacattacataattgctgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttatataatcaccatatt 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3545992 gcatatttaacattacataattgctgataattttaattcaacatctttaaacatttaacaagtttaccaatgtaattgttttttatataatcaccatatt 3545893  T
Q  480 attacacgacctatg 494  Q
    |||||||||||||||    
T  3545892 attacacgacctatg 3545878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 3553637 - 3553473
Alignment:
Q  19 aagcctcttgtgacaaagctctgatttgaagatgatcaacaaaaggttaaatcttttaccaaatttacatcaagttatgaagtcaaagtctgatctgaag 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3553637 aagcctcttgtgacaaagctctgatttgaagatgatcgacaaaaggttaaatcttttaccaaatttacatcaagttatgaagtcaaactctgatctgaag 3553538  T
Q  119 tcaaacacggatatgaagacagagctctgcaggatcaagttaacagtcaaggctctgaacaacat 183  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3553537 tcaaacacggatctgaagacagagctctgcaggatcaagttaatagtcaaggctctgaacaacat 3553473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 470
Target Start/End: Complemental strand, 24865081 - 24864999
Alignment:
Q  388 aacattacataattgctgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttatataat 470  Q
    |||||||||| | | ||||||||||| ||| || || |||||||||| ||||| ||||  ||| ||||| |||||||||||||    
T  24865081 aacattacattaattctgataatttttatttaatatttttaaacattcaacaatattaaaaatttaattattttttatataat 24864999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 461
Target Start/End: Original strand, 3421331 - 3421404
Alignment:
Q  388 aacattacataattgctgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgtttt 461  Q
    |||||||||| | || |||||||||| ||| || | |||||||||||| |||| |||| |||||||||||||||    
T  3421331 aacattacattaatgttgataatttttatttaatacctttaaacatttcacaatattagcaatgtaattgtttt 3421404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 466
Target Start/End: Original strand, 21118553 - 21118615
Alignment:
Q  404 tgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttata 466  Q
    |||||||||| ||| || || ||||||||||| |||| |||| |||||||||| |||||||||    
T  21118553 tgataatttttatttaatatttttaaacatttgacaatattaacaatgtaattattttttata 21118615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 467
Target Start/End: Complemental strand, 494332 - 494269
Alignment:
Q  404 tgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttatat 467  Q
    |||||||||| ||| || |||||||||||||| |||| |||| ||||| |||| ||||||||||    
T  494332 tgataattttcatttaatatctttaaacatttgacaatattaacaatgaaattattttttatat 494269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 470
Target Start/End: Complemental strand, 7183937 - 7183890
Alignment:
Q  423 tctttaaacatttaacaagattaccaatgtaattgttttttatataat 470  Q
    |||||||| |||| |||| ||||| |||||||||||||||||||||||    
T  7183937 tctttaaatatttcacaatattactaatgtaattgttttttatataat 7183890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 10252728 - 10252634
Alignment:
Q  29 tgacaaagctctgatttgaagatgatcaacaaaaggttaaatcttttaccaaatttacatcaagttatgaagtcaaagtctgatctgaagtcaaa 123  Q
    ||||||||||||||| |||||||||| ||||||| || ||| || | | ||| | | ||||||||||||||  |||  |||||||||||| ||||    
T  10252728 tgacaaagctctgatctgaagatgatgaacaaaaagtcaaagctctaatcaagtgtgcatcaagttatgaaaacaagctctgatctgaaggcaaa 10252634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 466
Target Start/End: Original strand, 3927602 - 3927664
Alignment:
Q  404 tgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttata 466  Q
    ||||||| || ||| ||||| ||||||||||| |||| |||| |||| |||||||||||||||    
T  3927602 tgataatatttatttaacatttttaaacatttcacaatattatcaatataattgttttttata 3927664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University