View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_high_11 (Length: 483)

Name: NF3121_high_11
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_high_11
NF3121_high_11
[»] chr7 (2 HSPs)
chr7 (11-467)||(44501197-44501653)
chr7 (255-343)||(32413624-32413712)
[»] chr3 (12 HSPs)
chr3 (161-366)||(45870386-45870593)
chr3 (15-348)||(20994819-20995154)
chr3 (161-348)||(20981806-20981995)
chr3 (170-225)||(20977477-20977532)
chr3 (152-364)||(45856777-45856991)
chr3 (146-225)||(2996371-2996450)
chr3 (255-310)||(25601740-25601795)
chr3 (72-225)||(20949493-20949649)
chr3 (96-222)||(20948805-20948934)
chr3 (287-345)||(778229-778287)
chr3 (262-343)||(25596902-25596983)
chr3 (152-220)||(45881805-45881873)
[»] chr4 (1 HSPs)
chr4 (158-366)||(3978077-3978287)
[»] chr5 (4 HSPs)
chr5 (74-352)||(7894982-7895264)
chr5 (136-366)||(38142015-38142247)
chr5 (61-135)||(7976609-7976683)
chr5 (314-366)||(7976853-7976905)
[»] chr6 (7 HSPs)
chr6 (254-364)||(33844279-33844389)
chr6 (255-312)||(33840288-33840345)
chr6 (255-343)||(7115536-7115624)
chr6 (255-343)||(7120608-7120696)
chr6 (255-343)||(7124012-7124100)
chr6 (287-343)||(7140758-7140814)
chr6 (287-343)||(8680372-8680428)
[»] chr2 (1 HSPs)
chr2 (254-342)||(43864048-43864136)


Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 467
Target Start/End: Original strand, 44501197 - 44501653
Alignment:
Q  11 tgagatgaaaatatgctaggcggaatttgtgcattgtcagcaaggacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  44501197 tgagatgaaaatatgctaggcggaatttgtgcattgtcagcatggacactaagtcctgaccgctggactatgtgtgaaatagcacaattcacaatccttt 44501296  T
Q  111 tgagtaggtgaaactccaagcgaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttatt 210  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501297 tgagtaggtgaaactccaagcaaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttatt 44501396  T
Q  211 gaatatcttgtaagtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagc 310  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501397 gaatatcttgaaagtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagc 44501496  T
Q  311 gtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgccaagtcagtctttacttacactctcagtgagttttaatttcttc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44501497 gtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgccaagtcggtctttacttacactctcagtgagttttaatttcttc 44501596  T
Q  411 tttgtcggtcgaattattatctcacttgacattctgataagaacctaatcatggaac 467  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44501597 tttgtcggtcgaattattatctcacttgacattctgataagtacctaatcatggaac 44501653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 343
Target Start/End: Complemental strand, 32413712 - 32413624
Alignment:
Q  255 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 343  Q
    |||||||| ||||| |||| ||||||||| | ||||||||||||||| ||||| |||| |||||  |||||| | || |||||||||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaag 32413624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 366
Target Start/End: Original strand, 45870386 - 45870593
Alignment:
Q  161 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaa 258  Q
    |||||||||||||||||  | |||||||||||| |||| || ||| |  |||||||||| |||||  |||| ||   |||||||  |||||| | |||||    
T  45870386 agtgagatagaggaatcccggagagataaaaccctagaaacaaatctggtgaatatcttataagttcgaaagtcatcagaatgcaatataagagaaggaa 45870485  T
Q  259 gacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcagg 358  Q
    ||||||||||||||||| |  |||| || || |||| |||||| ||||| |||| |||||||||| |||| |||||||||||||||||||  ||||||||    
T  45870486 gacgtttccaaagatccgtatatcttggtgataaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagtatgtgaaggataacacagtcagg 45870585  T
Q  359 taagtcgc 366  Q
    || |||||    
T  45870586 taggtcgc 45870593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 20994819 - 20995154
Alignment:
Q  15 atgaaaatatgctaggcggaatttgtgcattgtcagcaag-gacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttttga 113  Q
    ||||||||| |||| | |||||||| ||| ||||| |||| ||||| ||||  | || ||||||| |||||| |||||||  ||||||||||| |||| |    
T  20994819 atgaaaataagctatgaggaatttgcgcaatgtca-caagtgacacaaagttgtaactgctggacattgtgtgaaatagcgtaattcacaatctttttaa 20994917  T
Q  114 gtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttatt 210  Q
    ||   |||  ||| ||||| ||||||||  ||||||| | | |||  || |||||||||||||||||  |||||||||||| ||||||||||||| |  |    
T  20994918 gt---tgaggctcaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggt 20995014  T
Q  211 gaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaaca 308  Q
    |||||||||| ||||  |||| |||  |  |||| ||  ||| ||||||||||||||||||||||||||  || | ||||| ||||  ||||| ||||||    
T  20995015 gaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatccttatatattggggataaaacacaagtttgaaca 20995114  T
Q  309 gcgtttttggcattcaaaaaagacagtatgtgaaggataa 348  Q
    |||| |||||  |||| ||| || || |||||||||||||    
T  20995115 gcgtctttggtgttcagaaaggagagaatgtgaaggataa 20995154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 348
Target Start/End: Original strand, 20981806 - 20981995
Alignment:
Q  161 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaa 258  Q
    |||||||||||||||||  |||||||||||| ||||||||||||| |  ||||||||||| || |  |||| |||  |  ||||  | |||| |||||||    
T  20981806 agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaattacgaaagtctctattatgcaatgtaagagcaggaa 20981905  T
Q  259 gacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataa 348  Q
    |||||||||||||||| ||  || | ||||| ||||  ||||| |||||||| | |||||  |||| ||| || || |||||||||||||    
T  20981906 gacgtttccaaagatctttatatattggggataaaacacaagtttgaacagcatgtttggtgttcagaaaggagagaatgtgaaggataa 20981995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 20977532 - 20977477
Alignment:
Q  170 gaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 225  Q
    ||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||    
T  20977532 gaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttgtaagt 20977477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 364
Target Start/End: Original strand, 45856777 - 45856991
Alignment:
Q  152 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aa 249  Q
    |||| ||| |||| ||||||||||||  |||||||||||||||||||||| || ||  ||||||||||| ||||  |||| ||  | |||  | ||  ||    
T  45856777 agagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaatatcttgaaagttcgaaagtcataggaacacaatgtaa 45856876  T
Q  250 gtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataat 349  Q
    |    |||||  ||||||| ||||||||  |||| |||||||||||||||||   ||| |||| ||| || |||| ||||||||||||||| ||||||||    
T  45856877 gatttggaagttgtttccagagatccttgtatcttggggacaaaatgcaagttccaaccgcgtctttagcgttcagaaaagacagtatgtggaggataat 45856976  T
Q  350 gcagtcaggtaagtc 364  Q
      ||||| |||||||    
T  45856977 atagtcatgtaagtc 45856991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 2996371 - 2996450
Alignment:
Q  146 aaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 225  Q
    |||| |||||| || | ||| ||||||||||||  ||||||||||||||||||||| |||||  ||||| ||||||||||    
T  2996371 aaatcgagagtctgcaatgaaatagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagt 2996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 25601795 - 25601740
Alignment:
Q  255 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagc 310  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||| ||||||||    
T  25601795 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacagc 25601740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 20949649 - 20949493
Alignment:
Q  72 gctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagat 168  Q
    ||||||| ||||||  ||||||  ||||||||||||||||||||| ||||  ||| || |||||| ||||  ||| ||| | | |||  | || || |||    
T  20949649 gctggacattgtgtttaatagcgtaattcacaatccttttgagtatgtgaggctctaaacgaccaatatgatgcttaaaatcaagagcttataatgtgat 20949550  T
Q  169 agaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 225  Q
    |||||||||   |||||||||||  ||||||||||||||  ||||||||||||||||    
T  20949549 agaggaatcacaaagagataaaattttagacacgaatttggtgaatatcttgtaagt 20949493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 20948934 - 20948805
Alignment:
Q  96 aattcacaatccttttgagtaggtgaaactccaagcgaccattatggc---tgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaac 192  Q
    |||||||||||||||| |||| ||||  ||| |||||| || |||| |   | ||||  |||||||||| || |||||||| |||  ||||||||||||     
T  20948934 aattcacaatccttttaagtatgtgaggctctaagcgaacaatatgacgcttaaaatcaagagtgtgtattgcgatagagggatcacgaagagataaaat 20948835  T
Q  193 cttagacacgaatttattgaatatcttgta 222  Q
    ||||||||| || ||  |||||||||||||    
T  20948834 cttagacacaaacttggtgaatatcttgta 20948805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 345
Target Start/End: Original strand, 778229 - 778287
Alignment:
Q  287 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaagga 345  Q
    ||||||||||||||| || || || | |||||| ||||||||||| |||||||||||||    
T  778229 ggacaaaatgcaagtttggactgcctctttggctttcaaaaaagatagtatgtgaagga 778287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 25596983 - 25596902
Alignment:
Q  262 gtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 343  Q
    |||||||||||| ||||||||| |  |||||||||||||| ||||| || |  |||| ||||||||| ||||  ||||||||    
T  25596983 gtttccaaagattcttccatctcgtagacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaag 25596902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 45881805 - 45881873
Alignment:
Q  152 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttg 220  Q
    |||||||| |||| ||||||||||||    |||||||||||||| ||||| |||||  |||||||||||    
T  45881805 agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttg 45881873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 366
Target Start/End: Complemental strand, 3978287 - 3978077
Alignment:
Q  158 tgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcag 255  Q
    ||||||| ||||||||||||| ||||| ||||||| |||||||| ||| |  ||||| |||||||||    ||| |||||||||||| ||  ||| | ||    
T  3978287 tgtagtgcgatagaggaatcgcgaagaaataaaactttagacactaatctggtgaatttcttgtaagctccaaagtctgaagaatgcaatgtaagagtag 3978188  T
Q  256 gaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtc 355  Q
    ||||||||||||||||||||||  |||| | ||| |||| |||||| ||||| ||||  ||||  || ||||| || ||||||||||| |||||||  ||    
T  3978187 gaagacgtttccaaagatccttatatcttgtggataaaacgcaagtttgaaccgcgtggttggtgtttaaaaacgagagtatgtgaagaataatgctttc 3978088  T
Q  356 aggtaagtcgc 366  Q
    |||||||||||    
T  3978087 aggtaagtcgc 3978077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 352
Target Start/End: Complemental strand, 7895264 - 7894982
Alignment:
Q  74 tggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgaccattatggctg--aaattga-gagtgtgtagtgagatag 170  Q
    ||||| |||||| |||||||| |||||||||| |||||||||| ||||  ||| |||||||||  || |||   ||||| | |||  || |||  || ||    
T  7895264 tggacattgtgtgaaatagcataattcacaattcttttgagtaagtgaggctctaagcgaccagcattgctattaaattcaagagcctgcagtttgacag 7895165  T
Q  171 aggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcaggaagacgtttcca 268  Q
    |||||| | |||||||||||||||||||||| |||||  ||||| || |||||    ||||||||| |||||   ||  ||| || || ||| |||||||    
T  7895164 aggaattgcgaagagataaaaccttagacacaaattttgtgaatttcgtgtaaaatcgaaaatctgtagaatcgaatctaagagcgggtagaagtttcca 7895065  T
Q  269 aagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgca 352  Q
     |||| ||||||||||   |||||||||||||| ||||| || | ||||||||||||||| || || |||||||||||||||||    
T  7895064 gagattcttccatctgatagacaaaatgcaagt-tgaacggcttgtttggcattcaaaaaggaaagaatgtgaaggataatgca 7894982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 366
Target Start/End: Original strand, 38142015 - 38142247
Alignment:
Q  136 attatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgta-agtgtgaaaatc 234  Q
    |||||| ||||||||||||| ||  |||| || |||||||||  |||||| ||||||| ||  ||||||||| |||||||||  ||| |||  |||| ||    
T  38142015 attatgtctgaaattgagagagttcagtgcgagagaggaatcacgaagagttaaaaccctatgcacgaatttgttgaatatc-ggtatagttcgaaagtc 38142113  T
Q  235 tgaagaatgc--tataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagac 332  Q
    |||||||| |  |||||| ||||||||| ||||||| |||||| |||||||   ||||| |||  ||||   ||| || | ||| || |||||||| ||     
T  38142114 tgaagaatccaatataagagcaggaagaagtttccatagatccctccatcttaaggacagaattgaagttgtaactgcctgtttagcgttcaaaaaggag 38142213  T
Q  333 agtatgtgaaggataatgcagtcaggtaagtcgc 366  Q
    ||||||||||||||||  ||||||||||||||||    
T  38142214 agtatgtgaaggataacacagtcaggtaagtcgc 38142247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 7976609 - 7976683
Alignment:
Q  61 aagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgacc 135  Q
    ||||||| || ||||||| |||||| |||||||| ||||||||||||||||||||| ||||  ||| ||||||||    
T  7976609 aagtcctaaccgctggacattgtgtgaaatagcataattcacaatccttttgagtaagtgaggctctaagcgacc 7976683  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 7976853 - 7976905
Alignment:
Q  314 tttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgc 366  Q
    |||||| |||||||| || || ||||||||||||||||| || ||||||||||    
T  7976853 tttggcgttcaaaaaggagagaatgtgaaggataatgcattcgggtaagtcgc 7976905  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 254 - 364
Target Start/End: Original strand, 33844279 - 33844389
Alignment:
Q  254 aggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcag 353  Q
    ||||| ||||||||| ||||  |||||||||| ||||||||||||||| ||||| ||||||| ||  |||||||| ||||  |||| ||  | |||||||    
T  33844279 aggaatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcag 33844378  T
Q  354 tcaggtaagtc 364  Q
    || ||||||||    
T  33844379 tcgggtaagtc 33844389  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 33840288 - 33840345
Alignment:
Q  255 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgt 312  Q
    |||| ||||||||||||||  |||||||||| |||||||||||||||  |||||||||    
T  33840288 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgt 33840345  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 343
Target Start/End: Original strand, 7115536 - 7115624
Alignment:
Q  255 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 343  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7115536 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7115624  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 343
Target Start/End: Original strand, 7120608 - 7120696
Alignment:
Q  255 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 343  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7120608 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7120696  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 343
Target Start/End: Original strand, 7124012 - 7124100
Alignment:
Q  255 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 343  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7124012 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7124100  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 7140758 - 7140814
Alignment:
Q  287 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 343  Q
    ||||||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||    
T  7140758 ggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 7140814  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 8680372 - 8680428
Alignment:
Q  287 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 343  Q
    ||||||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||    
T  8680372 ggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 8680428  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 43864048 - 43864136
Alignment:
Q  254 aggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaa 342  Q
    ||||||||  ||||||||||   |||||||   ||||||||||||||| ||||| || ||||| ||||||||||| |||||||||||||    
T  43864048 aggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaa 43864136  T

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