View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3121_high_17 (Length: 385)
Name: NF3121_high_17
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 100 - 383
Target Start/End: Original strand, 2492953 - 2493236
Alignment:
| Q |
100 |
accgtcgaccctttctcttcgcgacttcctgtcaccacgtcgacggagacgacgttgtttcaacgcgtaaatcaacgttcaaccgtggcttcacagtgat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492953 |
accgtcgaccctttctcttcgcgacttcctgtcaccacgtcgacggagacgacgttgtttcaacgcgtaaatcaacgttcaaccgtggcttcacagtgat |
2493052 |
T |
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| Q |
200 |
atctaaaatgcttcgtcgtatcaaacctctcgataactccgttatctctaaaggtgtttctgaagcttctaaagattctatgaaacaaactatttctact |
299 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2493053 |
atctaaaatgcttcgacgtatcaaacctctcgataactccgttatctctaaaggtgtttctgaagcttctaaagattctatgaaacaaactatttctact |
2493152 |
T |
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| Q |
300 |
atgcttggtttgttaccttctgatcattttgatgttactgttagttttgagattcaaccccttcatcggttacttgtttcttct |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2493153 |
atgcttggtttgttaccttctgatcattttgatgttactgttagttttgagattcaacctcttcatcggttacttgtttcttct |
2493236 |
T |
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Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 100 - 383
Target Start/End: Original strand, 27095540 - 27095823
Alignment:
| Q |
100 |
accgtcgaccctttctcttcgcgacttcctgtcaccacgtcgacggagacgacgttgtttcaacgcgtaaatcaacgttcaaccgtggcttcacagtgat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27095540 |
accgtcgaccctttctcttcgcgacttcctgtcaccacgtcgacggagacgacgttgtttcaacgcgtaaatcaacgttcaaccgtggcttcacagtgat |
27095639 |
T |
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| Q |
200 |
atctaaaatgcttcgtcgtatcaaacctctcgataactccgttatctctaaaggtgtttctgaagcttctaaagattctatgaaacaaactatttctact |
299 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27095640 |
atctaaaatgcttcgacgtatcaaacctctcgataactccgttatctctaaaggtgtttctgaagcttctaaagattctatgaaacaaactatttctact |
27095739 |
T |
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| Q |
300 |
atgcttggtttgttaccttctgatcattttgatgttactgttagttttgagattcaaccccttcatcggttacttgtttcttct |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27095740 |
atgcttggtttgttaccttctgatcattttgatgttactgttagttttgagattcaacctcttcatcggttacttgtttcttct |
27095823 |
T |
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