View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_high_18 (Length: 344)

Name: NF3121_high_18
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_high_18
NF3121_high_18
[»] chr7 (3 HSPs)
chr7 (248-327)||(23684360-23684439)
chr7 (249-327)||(19736912-19736990)
chr7 (245-289)||(11694793-11694837)
[»] chr4 (5 HSPs)
chr4 (12-94)||(56051972-56052056)
chr4 (247-317)||(31807921-31807991)
chr4 (248-289)||(30137130-30137171)
chr4 (249-289)||(25611670-25611710)
chr4 (249-289)||(30138256-30138296)
[»] chr3 (3 HSPs)
chr3 (249-315)||(49086164-49086230)
chr3 (248-289)||(4486632-4486673)
chr3 (249-289)||(15844632-15844672)
[»] chr5 (2 HSPs)
chr5 (254-320)||(14946716-14946782)
chr5 (249-289)||(4909680-4909720)
[»] chr8 (1 HSPs)
chr8 (248-289)||(26492030-26492071)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 23684439 - 23684360
Alignment:
Q  248 tggtgacatttaggatgcacaagtgtaaaacttgtgcaccataggaaattttatttccaccattggatgaaatgagaaac 327  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  23684439 tggtgacatttaggatgcacaggtgtaaaacatgtgcaccataggaaagtttatttccaccattggatgagatgagaaac 23684360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 19736912 - 19736990
Alignment:
Q  249 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccataggaaattttatttccaccattggatgaaatgagaaac 327  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  19736912 ggtggcatttaagatgcacaagtgtaaaacttgtgcaccataggaaagtttatttccaccattggatgaaatgaaaaac 19736990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 11694793 - 11694837
Alignment:
Q  245 gagtggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 289  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||    
T  11694793 gagtggtggcatttagtatgcacaagtgttaaacttgtgcaccat 11694837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 56052056 - 56051972
Alignment:
Q  12 agagaaacaaaaagttagtggatcccatggatttttggtct--ctcttgtatttcttcgctttgccaaacagtggaagttaccca 94  Q
    |||||||||||||||| |||| ||| |||||||||||||||  |||||||||||||  | | |||||||||||||||||||||||    
T  56052056 agagaaacaaaaagttggtgggtcctatggatttttggtctctctcttgtatttctatgttatgccaaacagtggaagttaccca 56051972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 31807991 - 31807921
Alignment:
Q  247 gtggtgacatttaggatgcacaagtgtaaaacttgtgcaccataggaaattttatttccaccattggatga 317  Q
    |||||| |||||||| |||||||| ||||||||| |||| ||| ||||| |||||||| ||||||||||||    
T  31807991 gtggtggcatttagggtgcacaagcgtaaaacttttgcatcatgggaaaatttatttctaccattggatga 31807921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 30137130 - 30137171
Alignment:
Q  248 tggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 289  Q
    ||||| ||||||| |||||||||||| |||||||||||||||    
T  30137130 tggtggcatttagaatgcacaagtgttaaacttgtgcaccat 30137171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 25611670 - 25611710
Alignment:
Q  249 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 289  Q
    |||| ||||||| |||||||||||||||| |||||||||||    
T  25611670 ggtggcatttagtatgcacaagtgtaaaatttgtgcaccat 25611710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 30138296 - 30138256
Alignment:
Q  249 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 289  Q
    |||| ||||||| |||||||||||| |||||||||||||||    
T  30138296 ggtggcatttagaatgcacaagtgttaaacttgtgcaccat 30138256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 49086230 - 49086164
Alignment:
Q  249 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccataggaaattttatttccaccattggat 315  Q
    |||| |||||||||||||||| ||||||| ||||||||||| ||||| |||||||| ||||||||||    
T  49086230 ggtggcatttaggatgcacaaatgtaaaatttgtgcaccatgggaaagtttatttctaccattggat 49086164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 4486673 - 4486632
Alignment:
Q  248 tggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 289  Q
    ||||| |||||||| ||||||||||| |||||||||||||||    
T  4486673 tggtggcatttagggtgcacaagtgttaaacttgtgcaccat 4486632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 15844672 - 15844632
Alignment:
Q  249 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 289  Q
    |||| ||||||| |||||||||||||||| |||||||||||    
T  15844672 ggtggcatttagtatgcacaagtgtaaaatttgtgcaccat 15844632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 14946716 - 14946782
Alignment:
Q  254 catttaggatgcacaagtgtaaaacttgtgcaccataggaaattttatttccaccattggatgaaat 320  Q
    |||||||| |||||||  |||||||||||||||||| | ||| |||||||| |||||||||||||||    
T  14946716 catttagggtgcacaaacgtaaaacttgtgcaccatggaaaagtttatttctaccattggatgaaat 14946782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 4909720 - 4909680
Alignment:
Q  249 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 289  Q
    |||| |||||||| ||||||||||| |||||||||||||||    
T  4909720 ggtggcatttagggtgcacaagtgttaaacttgtgcaccat 4909680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 26492030 - 26492071
Alignment:
Q  248 tggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 289  Q
    ||||| |||||||| ||||||||||| |||||||||||||||    
T  26492030 tggtggcatttagggtgcacaagtgttaaacttgtgcaccat 26492071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University