View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3121_high_25 (Length: 287)
Name: NF3121_high_25
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 867176 - 866914
Alignment:
| Q |
1 |
ttcctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
867176 |
ttcctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaa |
867077 |
T |
|
| Q |
101 |
accctaaccctaaccctaatcctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaaccacatcatcatcctcctcctc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
867076 |
accctaaccctaaccctaaccctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaacctcatcatcctcctcctcctc |
866977 |
T |
|
| Q |
201 |
cagatctctcaaaaaccctacaacattctcccacaataccctaatcgcaatttcccttatccc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
866976 |
cagatctctcaaaaaccctacaacattctcccacaataccctaatcgcaatttcccttatccc |
866914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 1228453 - 1228191
Alignment:
| Q |
1 |
ttcctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1228453 |
ttcctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaa |
1228354 |
T |
|
| Q |
101 |
accctaaccctaaccctaatcctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaaccacatcatcatcctcctcctc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
1228353 |
accctaaccctaaccctaaccctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaacctcatcatcctcctcctcctc |
1228254 |
T |
|
| Q |
201 |
cagatctctcaaaaaccctacaacattctcccacaataccctaatcgcaatttcccttatccc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1228253 |
cagatctctcaaaaaccctacaacattctcccacaataccctaatcgcaatttcccttatccc |
1228191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University