View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_high_3 (Length: 624)

Name: NF3121_high_3
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_high_3
NF3121_high_3
[»] chr7 (13 HSPs)
chr7 (1-615)||(32838179-32838800)
chr7 (190-307)||(26049133-26049251)
chr7 (185-304)||(328701-328817)
chr7 (413-524)||(26048884-26048996)
chr7 (538-591)||(26048811-26048864)
chr7 (410-598)||(328909-329100)
chr7 (190-279)||(47817896-47817985)
chr7 (539-596)||(35240593-35240650)
chr7 (328-369)||(26049066-26049107)
chr7 (536-596)||(2946755-2946815)
chr7 (536-596)||(37997837-37997897)
chr7 (539-596)||(1503285-1503342)
chr7 (536-596)||(6483803-6483863)
[»] chr3 (6 HSPs)
chr3 (1-195)||(49589020-49589214)
chr3 (434-514)||(21980655-21980736)
chr3 (434-514)||(22003086-22003167)
chr3 (417-511)||(21220463-21220556)
chr3 (317-369)||(27948569-27948621)
chr3 (539-593)||(27948350-27948404)
[»] chr4 (9 HSPs)
chr4 (187-307)||(5827133-5827253)
chr4 (413-524)||(5827390-5827502)
chr4 (317-365)||(43527422-43527470)
chr4 (408-508)||(43527537-43527636)
chr4 (543-593)||(5827513-5827563)
chr4 (190-279)||(23668729-23668819)
chr4 (536-582)||(38814698-38814744)
chr4 (546-580)||(53721726-53721760)
chr4 (328-369)||(5827279-5827320)
[»] chr5 (8 HSPs)
chr5 (413-494)||(18924348-18924429)
chr5 (434-514)||(7509640-7509721)
chr5 (540-596)||(18924479-18924535)
chr5 (539-596)||(16050488-16050545)
chr5 (536-596)||(41196304-41196364)
chr5 (554-596)||(1014181-1014223)
chr5 (544-582)||(35471635-35471673)
chr5 (434-514)||(29372189-29372270)
[»] chr1 (8 HSPs)
chr1 (408-597)||(40042746-40042941)
chr1 (317-366)||(4108442-4108491)
chr1 (539-596)||(48912027-48912084)
chr1 (536-596)||(16263998-16264058)
chr1 (539-581)||(4108709-4108751)
chr1 (538-582)||(3899015-3899059)
chr1 (410-498)||(4108576-4108663)
chr1 (538-582)||(50501544-50501588)
[»] chr8 (6 HSPs)
chr8 (190-279)||(9369591-9369681)
chr8 (536-598)||(35971964-35972026)
chr8 (537-596)||(32966824-32966883)
chr8 (539-596)||(14109669-14109726)
chr8 (537-581)||(2706836-2706880)
chr8 (536-582)||(41413498-41413544)
[»] chr2 (6 HSPs)
chr2 (190-307)||(10240896-10241015)
chr2 (407-508)||(8962075-8962175)
chr2 (539-596)||(8962212-8962269)
chr2 (317-365)||(8961961-8962009)
chr2 (317-369)||(2279922-2279974)
chr2 (536-596)||(23988561-23988621)
[»] chr6 (1 HSPs)
chr6 (536-596)||(26420732-26420792)


Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Complemental strand, 32838800 - 32838179
Alignment:
Q  1 gtcaatcctcacccacaataaagagaatatagaagcaaggagaacggcccagacaataacaacggttggtgtacgattcgatttccccaaaagatccttc 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  32838800 gtcaatcctcacccacaacaaagagaatatagaagcaaggagaacaacccagacaataacaacggttcgtgtacgattcgatttccccaaaagacccttc 32838701  T
Q  101 aagaaagggtataaatgagcaataacccatatagcaaagaagagctttccaaatagtggaccccgagattggtaactactatttatggaaaaagaacaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32838700 aagaaagggtataaatgagcaataacccatatagcaaagaagagctttccaaatagtggaccccgagattggtaaccactatttatggaaaaagaacaaa 32838601  T
Q  201 tctttgacatataatgagggataaattaaacaggattctcattttcataatcattaaaatgaaaagattacatctgcaaaagaatagcacatctgcaagt 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  32838600 tctttgacatataatgagagataaattaaacaggattctcattttcataatcattaaaatgaaaagattaaatctgcaaaagaatagcacatctgcaact 32838501  T
Q  301 aagaacatgcccgcgtgacggaggtcagggaaagagaaagggagggagaggtggaagaaagtgacggagcggaagaggcggaagaaagtg---tgnnnnn 397  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||   |          
T  32838500 aagaacaagcccgcgtgacggaggtgagggaaagagaaagggagagagaggtggaagaaagtgacggagcggaagagacggaagaaagtgtttttttttt 32838401  T
Q  398 nnncctttccct-gggttgttttggttgagaggttgaagaaagtgtg-aaaaaattatagtgtggagagagtttagtaaaattagtgttcttcatcaatc 495  Q
         |||| || |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||  ||||||||||||||||||||||    
T  32838400 ttttttttctctggggttgttttggttgagaggttgaagaaagtgtgaaaaaaattctagtgtggagggagtttagcgaaattagtgttcttcatcaatc 32838301  T
Q  496 taatagtaacacatgtcatcattgttaaat-nnnnnnnnttgtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggc- 593  Q
    ||||||||||||||||||||||||||||||         || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  32838300 taatagtaacacatgtcatcattgttaaataaaaaaaaattctcttttataatgtctcctaccgtaggagacctattcaagtctcctaacggaaacggca 32838201  T
Q  594 gcccagtttgttaggaaacttc 615  Q
     |||||||||||||||||||||    
T  32838200 ccccagtttgttaggaaacttc 32838179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 190 - 307
Target Start/End: Complemental strand, 26049251 - 26049133
Alignment:
Q  190 aaaagaacaaatctttgacatataatgagggataaattaaacaggattctcattttcataatcattaaaatgaaaagattacatctgc-aaaagaatagc 288  Q
    |||||||||||||||||||||||||| ||  |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||| |    
T  26049251 aaaagaacaaatctttgacatataataagtaataaatcaaacaggattctcactttcataaccattaaaatgaaaagattacatctgcaaaaaaaataac 26049152  T
Q  289 acatctgcaagtaagaaca 307  Q
    |||| ||||| ||||||||    
T  26049151 acatttgcaactaagaaca 26049133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 185 - 304
Target Start/End: Original strand, 328701 - 328817
Alignment:
Q  185 atggaaaaagaacaaatctttgacatataatgagggataaattaaacaggattctcattttcataatcattaaaatgaaaagattacatctgcaaaagaa 284  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||||||| || |||||||| |||||||||||||||||||||| |||||   ||    
T  328701 atggtaaaagaacaaatctttgacatataatgaggaataaatcaaacaggattcacactttcataaccattaaaatgaaaagattacatatgcaa---aa 328797  T
Q  285 tagcacatctgcaagtaaga 304  Q
    || ||||||||||| |||||    
T  328798 taacacatctgcaactaaga 328817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 413 - 524
Target Start/End: Complemental strand, 26048996 - 26048884
Alignment:
Q  413 ttgttttggttgagaggttgaagaaagtgtgaaaaaa-ttatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaacacatgt 511  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| || | |||||| |  | |||||||||||||||||||||||||| ||||    
T  26048996 ttgttttggttgagaggttgaagaaagtgtgaaaaaaattctagtgtggagggattatagtaagaccaatgttcttcatcaatctaatagtaacatatgt 26048897  T
Q  512 catcattgttaaa 524  Q
    |||  ||||||||    
T  26048896 catttttgttaaa 26048884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 591
Target Start/End: Complemental strand, 26048864 - 26048811
Alignment:
Q  538 cttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacg 591  Q
    |||||||||||||||||||||||||||||| |||||||||||||| || |||||    
T  26048864 cttttataatgtctcataccgtaggagacccattcaagtctcctaccgaaaacg 26048811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 598
Target Start/End: Original strand, 328909 - 329100
Alignment:
Q  410 gggttgttttggttgagaggttgaagaaagtgtg--aaaaaattatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaacac 507  Q
    |||||||||||||||| |||||||||||||||||  |||||||| | |||||||| || | || ||| ||  |||||||||  ||||||||| |||||||    
T  328909 gggttgttttggttgataggttgaagaaagtgtgaaaaaaaattcttgtgtggagggattataataatatcggtgttcttcgccaatctaatggtaacac 329008  T
Q  508 atgtcatcattgttaaatnnnnnnnnt-tgtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgccca 598  Q
     ||||||  |||||| ||        |  || |||||||| ||||| |||||||||||||| ||| |||||||| |  | ||||||||||||    
T  329009 ttgtcatttttgttatattaaaaaaatcagttttttataaggtctcctaccgtaggagacccattgaagtctccaacagtaaacggcgccca 329100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 47817896 - 47817985
Alignment:
Q  190 aaaagaacaaatctttgacatataatgagggataaattaaacaggattctca-ttttcataatcattaaaatgaaaagattacatctgcaa 279  Q
    ||||||||||||| ||||  |||| ||||| |||||| ||||||||||| || ||||||||| |||| ||||||||||||||||| |||||    
T  47817896 aaaagaacaaatcgttgatgtatattgaggaataaatgaaacaggattcacacttttcataa-cattcaaatgaaaagattacatatgcaa 47817985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 596
Target Start/End: Complemental strand, 35240650 - 35240593
Alignment:
Q  539 ttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    |||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||||||    
T  35240650 ttttttaatgtcttctaccgtaggagacatattcaagtctcctaccggaaacggcgcc 35240593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 26049107 - 26049066
Alignment:
Q  328 gggaaagagaaagggagggagaggtggaagaaagtgacggag 369  Q
    |||||||||||||||||||||||||||||| ||| |||||||    
T  26049107 gggaaagagaaagggagggagaggtggaagtaagcgacggag 26049066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 596
Target Start/End: Complemental strand, 2946815 - 2946755
Alignment:
Q  536 gtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    ||||||| ||||||||| | |||| |||||||||||||||||||||| |  ||||||||||    
T  2946815 gtcttttttaatgtctcctcccgtgggagacctattcaagtctcctaccataaacggcgcc 2946755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 596
Target Start/End: Original strand, 37997837 - 37997897
Alignment:
Q  536 gtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    ||||||| ||||||||| | |||| |||||||||||||||||||||| |  ||||||||||    
T  37997837 gtcttttttaatgtctcctcccgtgggagacctattcaagtctcctaccataaacggcgcc 37997897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 596
Target Start/End: Original strand, 1503285 - 1503342
Alignment:
Q  539 ttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    |||| ||||||||| ||| || |||||||||||||||||||||| |  ||||||||||    
T  1503285 ttttttaatgtctcctactgtgggagacctattcaagtctcctaccataaacggcgcc 1503342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 596
Target Start/End: Complemental strand, 6483863 - 6483803
Alignment:
Q  536 gtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    ||||||| ||||||||| | | || |||||||||||||||||||||| |  ||||||||||    
T  6483863 gtcttttttaatgtctcctcctgtgggagacctattcaagtctcctaccataaacggcgcc 6483803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 6e-82; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 49589020 - 49589214
Alignment:
Q  1 gtcaatcctcacccacaataaagagaatatagaagcaaggagaacggcccagacaataacaacggttggtgtacgattcgatttccccaaaagatccttc 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||| |||||    
T  49589020 gtcaatcctcacccacaacaaagagaatatagaagcaaggagaacggcccagacaataacaatagttggtgtgcgattcgatttccccaaaagacccttc 49589119  T
Q  101 aagaaagggtataaatgagcaataacccatatagcaaagaagagctttccaaatagtggaccccgagattggtaactactatttatggaaaaaga 195  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||    
T  49589120 aagaaagggtataaatgagcaatgacccatatagcaaagaagagctttccaaatagtggaccccaagattggtaaccactgtttatggcaaaaga 49589214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 21980736 - 21980655
Alignment:
Q  434 agaaagtgtgaaaaaa-ttatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaacacatgtcat 514  Q
    |||||||||||||||| |||||||||||||||| |  |||||||| ||||||||||||||||||||| || ||| |||||||    
T  21980736 agaaagtgtgaaaaaaattatagtgtggagagattacagtaaaatcagtgttcttcatcaatctaatggtgacaaatgtcat 21980655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 22003167 - 22003086
Alignment:
Q  434 agaaagtgtgaaaaaa-ttatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaacacatgtcat 514  Q
    |||||||||||||||| |||||||||||||||| |  |||||||| ||||||||||||||||||||| || ||| |||||||    
T  22003167 agaaagtgtgaaaaaaattatagtgtggagagattacagtaaaatcagtgttcttcatcaatctaatggtgacaaatgtcat 22003086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 417 - 511
Target Start/End: Original strand, 21220463 - 21220556
Alignment:
Q  417 tttggttgagaggttgaagaaagtgtgaaaaaattatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaacacatgt 511  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| || |  | ||| || || ||||||||||||||||||  ||||||||||    
T  21220463 tttggttgagaggttgaagaaagtgt-aaaaaattctagtgtggagggattacaataagatcagcgttcttcatcaatctaatgttaacacatgt 21220556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 27948621 - 27948569
Alignment:
Q  317 gacggaggtcagggaaagagaaagggagggagaggtggaagaaagtgacggag 369  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||    
T  27948621 gacggaggtaagggaaagagaaagggaggttgaggtggaagaaaatgacggag 27948569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 593
Target Start/End: Complemental strand, 27948404 - 27948350
Alignment:
Q  539 ttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggc 593  Q
    |||| |||||| || ||||||||||||||||||||||||| ||| || |||||||    
T  27948404 ttttttaatgtttcctaccgtaggagacctattcaagtctgctaccgaaaacggc 27948350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 187 - 307
Target Start/End: Original strand, 5827133 - 5827253
Alignment:
Q  187 ggaaaaagaacaaatctttgacatataatgagggataaattaaacaggattctcattttcataatcattaaaatgaaaagattacatctgcaaaagaata 286  Q
    ||||||||||||||||||||||||||||||||  |||||| ||| |||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||    
T  5827133 ggaaaaagaacaaatctttgacatataatgagcaataaatcaaataggattctcactttcataaccattaaaataaaaagattacatctgcaaaaaaata 5827232  T
Q  287 gcacatctgcaagtaagaaca 307  Q
     ||||||||||| ||||||||    
T  5827233 acacatctgcaactaagaaca 5827253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 413 - 524
Target Start/End: Original strand, 5827390 - 5827502
Alignment:
Q  413 ttgttttggttgagaggttgaagaaagtgt-gaaaaaattatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaacacatgt 511  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||| || || | |||||| |  | |||||||||||| ||||||||||||| ||||    
T  5827390 ttgttttggttgagaggttgaagaaagtgtagaaaaaattctagtgtgaagggattatagtaagaccaatgttcttcatcactctaatagtaacatatgt 5827489  T
Q  512 catcattgttaaa 524  Q
    |||  ||||||||    
T  5827490 catttttgttaaa 5827502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 43527422 - 43527470
Alignment:
Q  317 gacggaggtcagggaaagagaaagggagggagaggtggaagaaagtgac 365  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  43527422 gacggcggtgagggaaagggaaagggagggagaggtggaagaaagtgac 43527470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 508
Target Start/End: Original strand, 43527537 - 43527636
Alignment:
Q  408 ctgggttgttttggttgagaggttgaagaaagtgtgaaaaaattatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaacac 507  Q
    |||||||||||| |||||||||||||||||||||  |||| ||||||||||| |  || | |||||  ||  |||||||||||||||||||| || ||||    
T  43527537 ctgggttgttttagttgagaggttgaagaaagtg-aaaaatattatagtgtgaaaggattatagtatgatcggtgttcttcatcaatctaatggttacac 43527635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 593
Target Start/End: Original strand, 5827513 - 5827563
Alignment:
Q  543 ataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggc 593  Q
    |||||||||| |||||||| ||||| ||||||||||||||  |||||||||    
T  5827513 ataatgtctcctaccgtagaagacccattcaagtctcctactggaaacggc 5827563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 23668819 - 23668729
Alignment:
Q  190 aaaagaacaaatctttgacatataatgagggataaattaaacaggattctca-ttttcataatcattaaaatgaaaagattacatctgcaa 279  Q
    ||||||||||||| ||||  |||| | ||| |||||| |||||| |||| || |||| |||| |||| || ||||||||||||||||||||    
T  23668819 aaaagaacaaatcgttgatgtatattaaggaataaatcaaacagaattcacactttttataaacattcaattgaaaagattacatctgcaa 23668729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 582
Target Start/End: Complemental strand, 38814744 - 38814698
Alignment:
Q  536 gtcttttataatgtctcataccgtaggagacctattcaagtctccta 582  Q
    ||||||||||  ||||| |||||||||||||||||||| ||||||||    
T  38814744 gtcttttatatcgtctcctaccgtaggagacctattcacgtctccta 38814698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 580
Target Start/End: Complemental strand, 53721760 - 53721726
Alignment:
Q  546 atgtctcataccgtaggagacctattcaagtctcc 580  Q
    ||||||| |||||||||||||||||||||||||||    
T  53721760 atgtctcctaccgtaggagacctattcaagtctcc 53721726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 5827279 - 5827320
Alignment:
Q  328 gggaaagagaaagggagggagaggtggaagaaagtgacggag 369  Q
    |||||||||||||||||||||| ||||||| ||| |||||||    
T  5827279 gggaaagagaaagggagggagacgtggaagtaagcgacggag 5827320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 413 - 494
Target Start/End: Original strand, 18924348 - 18924429
Alignment:
Q  413 ttgttttggttgagaggttgaagaaagtgtgaaaaaattatagtgtggagagagtttagtaaaattagtgttcttcatcaat 494  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||| || | |||||| || | ||||||||||||||    
T  18924348 ttgtattggttgtgaggttgaagaaagtgtgaaaaaattatagtgtggagggattatagtaagatcaatgttcttcatcaat 18924429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 514
Target Start/End: Original strand, 7509640 - 7509721
Alignment:
Q  434 agaaagtgtgaaaa-aattatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaacacatgtcat 514  Q
    |||||||||||||| ||||||||||||||| || |  ||||| || ||||||||||||||||||||| || ||| |||||||    
T  7509640 agaaagtgtgaaaaaaattatagtgtggagggattacagtaagatcagtgttcttcatcaatctaatggtgacaaatgtcat 7509721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 540 - 596
Target Start/End: Original strand, 18924479 - 18924535
Alignment:
Q  540 tttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    ||| ||| ||||| |||||| |||||||||||||||||||||| |||||||||||||    
T  18924479 tttttaaagtctcctaccgtgggagacctattcaagtctcctatcggaaacggcgcc 18924535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 596
Target Start/End: Original strand, 16050488 - 16050545
Alignment:
Q  539 ttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    |||| |||||||||||||||||| |||||||||||| ||||||| | |||||| ||||    
T  16050488 ttttttaatgtctcataccgtagaagacctattcaaatctcctaccagaaacgacgcc 16050545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 596
Target Start/End: Complemental strand, 41196364 - 41196304
Alignment:
Q  536 gtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    ||||||| ||||||||| | |||| |||||||||||||||||||||| |  ||||||||||    
T  41196364 gtcttttttaatgtctccttccgtgggagacctattcaagtctcctaccataaacggcgcc 41196304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 596
Target Start/End: Original strand, 1014181 - 1014223
Alignment:
Q  554 taccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    |||||||||||||||||  |||||||||| |||||||||||||    
T  1014181 taccgtaggagacctatctaagtctcctatcggaaacggcgcc 1014223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 582
Target Start/End: Original strand, 35471635 - 35471673
Alignment:
Q  544 taatgtctcataccgtaggagacctattcaagtctccta 582  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  35471635 taatgtctcctaccgtgggagacctattcaagtctccta 35471673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 514
Target Start/End: Original strand, 29372189 - 29372270
Alignment:
Q  434 agaaagtgtgaaaaaa-ttatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaacacatgtcat 514  Q
    |||||||||||||||| || |||||||||| || |  ||||| || | ||||||||||||||||||| || ||| |||||||    
T  29372189 agaaagtgtgaaaaaaattctagtgtggagggattacagtaagatcaatgttcttcatcaatctaatggtgacaaatgtcat 29372270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 408 - 597
Target Start/End: Original strand, 40042746 - 40042941
Alignment:
Q  408 ctgggttgttttggttgagaggttgaagaaagtgtgaaaaaa--ttatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaac 505  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  || | |||||| ||  ||||||| |||||||||  | |||||    
T  40042746 ctgggttgttttggttgagaggttgaagaaagtgtgaaaaaaaattatagtgtggaaggattatagtaagatcggtgttctccatcaatctcttggtaac 40042845  T
Q  506 acatgtcatcattgttaaatnnnnnnnn----ttgtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgccc 597  Q
    |||  ||||  |||||| ||            |  |||||||||||||||| |||||||| |||||||||||| ||| ||| || |||||||||||    
T  40042846 acaattcatttttgttatataaaaaaaaaaattaatcttttataatgtctcctaccgtagaagacctattcaaatctactaccgaaaacggcgccc 40042941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 4108442 - 4108491
Alignment:
Q  317 gacggaggtcagggaaagagaaagggagggagaggtggaagaaagtgacg 366  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||||    
T  4108442 gacggaggtaagggaaagagaaagggaggttgaggtggaagaaattgacg 4108491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 596
Target Start/End: Original strand, 48912027 - 48912084
Alignment:
Q  539 ttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    |||| ||||||||| ||| |||||||||||||||  |||||||| |||||||||||||    
T  48912027 ttttttaatgtctcctacagtaggagacctattctcgtctcctaccggaaacggcgcc 48912084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 596
Target Start/End: Complemental strand, 16264058 - 16263998
Alignment:
Q  536 gtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    ||||||| ||||||||| | |||| |||||||||||||||||||||| |  ||||||||||    
T  16264058 gtcttttttaatgtctcctcccgtgggagacctattcaagtctcctaccataaacggcgcc 16263998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 581
Target Start/End: Original strand, 4108709 - 4108751
Alignment:
Q  539 ttttataatgtctcataccgtaggagacctattcaagtctcct 581  Q
    |||| ||||||||| |||||||||||||||||| |||||||||    
T  4108709 ttttttaatgtctcctaccgtaggagacctatttaagtctcct 4108751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 582
Target Start/End: Complemental strand, 3899059 - 3899015
Alignment:
Q  538 cttttataatgtctcataccgtaggagacctattcaagtctccta 582  Q
    ||||||||  ||||| |||||||||||||||||||| ||||||||    
T  3899059 cttttatatagtctcctaccgtaggagacctattcacgtctccta 3899015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 4108576 - 4108663
Alignment:
Q  410 gggttgttttggttgagaggttgaagaaagtgtgaaaaaattatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaa 498  Q
    |||||||||| |||  ||| ||||||||||||  |||| ||| |||||||||| || | |||||| || | ||||||||||||||||||    
T  4108576 gggttgttttagtttggagattgaagaaagtga-aaaatattttagtgtggagggattatagtaagatcaatgttcttcatcaatctaa 4108663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 582
Target Start/End: Original strand, 50501544 - 50501588
Alignment:
Q  538 cttttataatgtctcataccgtaggagacctattcaagtctccta 582  Q
    ||||||||  ||||| |||||||||||||||||||| ||||||||    
T  50501544 cttttatatagtctcctaccgtaggagacctattcacgtctccta 50501588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 9369681 - 9369591
Alignment:
Q  190 aaaagaacaaatctttgacatataatgagggataaattaaacaggattctca-ttttcataatcattaaaatgaaaagattacatctgcaa 279  Q
    ||||||||||||| ||||  |||| ||||| |||||| ||||| ||||| || ||||||||| |||| |||||||||||||||||||||||    
T  9369681 aaaagaacaaatcattgatgtatattgaggaataaatcaaacatgattcacacttttcataaacattcaaatgaaaagattacatctgcaa 9369591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 536 - 598
Target Start/End: Original strand, 35971964 - 35972026
Alignment:
Q  536 gtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgccca 598  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||| |  ||||||||||||    
T  35971964 gtcttttttaatgtctcctaccgtaggagacctattcaagtctcctaccataaacggcgccca 35972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 596
Target Start/End: Original strand, 32966824 - 32966883
Alignment:
Q  537 tcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||   |||||||||||    
T  32966824 tcttttttaatgtctcataccataggagacctatttaagtctcctacgagaaacggcgcc 32966883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 596
Target Start/End: Original strand, 14109669 - 14109726
Alignment:
Q  539 ttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||| | |||| ||||||    
T  14109669 ttttttaatgtctcctactgtaggagacctattcaagtctcctaccagaaatggcgcc 14109726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 581
Target Start/End: Complemental strand, 2706880 - 2706836
Alignment:
Q  537 tcttttataatgtctcataccgtaggagacctattcaagtctcct 581  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||    
T  2706880 tcttttttaatgtctcctaccgtgggagacctattcaagtctcct 2706836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 41413498 - 41413544
Alignment:
Q  536 gtcttttataatgtctcataccgtaggagacctattcaagtctccta 582  Q
    ||||||||||  ||||| |||||||||||||||||||| ||||||||    
T  41413498 gtcttttatatagtctcctaccgtaggagacctattcacgtctccta 41413544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 190 - 307
Target Start/End: Complemental strand, 10241015 - 10240896
Alignment:
Q  190 aaaagaacaaatctttgacatataatgagggataaattaaaca--ggattctcattttcataatcattaaaatgaaaagattacatctgcaaaagaatag 287  Q
    ||||||||||||| |||| |||||| |||| || ||| || ||  |||||| || |||||||  |||| ||||||||||||||||| | |||||||| |     
T  10241015 aaaagaacaaatcattgatatataacgaggaatgaatcaaccacgggattcacactttcatatccattcaaatgaaaagattacatatacaaaagaaaaa 10240916  T
Q  288 cacatctgcaagtaagaaca 307  Q
    ||||||||||| ||||||||    
T  10240915 cacatctgcaactaagaaca 10240896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 508
Target Start/End: Original strand, 8962075 - 8962175
Alignment:
Q  407 cctgggttgttttggttgagaggttgaagaaagtgtgaaaaaattatagtgtggagagagtttagtaaaattagtgttcttcatcaatctaatagtaaca 506  Q
    ||||||||| ||| |||||||||||||||||||||  ||||||||||||||| ||  || | |||||| ||  || ||||||||||||||||| || |||    
T  8962075 cctgggttggtttagttgagaggttgaagaaagtg-aaaaaaattatagtgttgaaggattatagtaagatcggtcttcttcatcaatctaatggttaca 8962173  T
Q  507 ca 508  Q
    ||    
T  8962174 ca 8962175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 596
Target Start/End: Original strand, 8962212 - 8962269
Alignment:
Q  539 ttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    |||||||||||||| ||| |||||||||||||| |||||||||| |||||||| ||||    
T  8962212 ttttataatgtctcctacagtaggagacctatttaagtctcctaccggaaacgacgcc 8962269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 8961961 - 8962009
Alignment:
Q  317 gacggaggtcagggaaagagaaagggagggagaggtggaagaaagtgac 365  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  8961961 gacggtggtgagggaaagggaaagggagggagaggtggaagaaagtgac 8962009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 2279922 - 2279974
Alignment:
Q  317 gacggaggtcagggaaagagaaagggagggagaggtggaagaaagtgacggag 369  Q
    |||||| || |||||||||||||||||||  ||||||||||||| ||||||||    
T  2279922 gacggatgtaagggaaagagaaagggaggttgaggtggaagaaattgacggag 2279974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 596
Target Start/End: Complemental strand, 23988621 - 23988561
Alignment:
Q  536 gtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    ||||||| |||| |||| | |||| |||||||||||||||||||||| |  ||||||||||    
T  23988621 gtcttttttaatttctcctcccgtgggagacctattcaagtctcctaccataaacggcgcc 23988561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 596
Target Start/End: Original strand, 26420732 - 26420792
Alignment:
Q  536 gtcttttataatgtctcataccgtaggagacctattcaagtctcctaacggaaacggcgcc 596  Q
    ||||||| || |||||| |||||| |||||||||||||||||||||| |  ||||||||||    
T  26420732 gtcttttttattgtctcctaccgtgggagacctattcaagtctcctaccataaacggcgcc 26420792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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