View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3121_high_34 (Length: 243)
Name: NF3121_high_34
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16733783 - 16734009
Alignment:
| Q |
1 |
tggcgttattccttcgaagctaggtcaaaatggaagattaactgaggttgatttatcgacaaataaactcactggaatattgccaaaatcactttgcttt |
100 |
Q |
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| T |
16733783 |
tggcgttattccttcgaagctaggtcaaaatggaagattaactgaggttgatttatcgacaaataaactcactggaatattgccaaaatcactttgcttt |
16733882 |
T |
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| Q |
101 |
gggaagagactaaagattttgatcttgcttaacaactttttgtttggttctttacctaatgatcttggtcaatgctacacactccaaagagttagaattg |
200 |
Q |
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| T |
16733883 |
gggaagagactaaagattttgatcttgcttaacaactttttgtttggttctttacctaatgatcttggtcaatgctacacactccaaagagttagaattg |
16733982 |
T |
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| Q |
201 |
gtcaaaactatttcactggttcaattc |
227 |
Q |
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| T |
16733983 |
gtcaaaactatttcactggttcaattc |
16734009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 39227380 - 39227203
Alignment:
| Q |
48 |
ttgatttatcgacaaataaactcactggaatattgccaaaatcactttgctttgggaagagactaaagattttgatcttgcttaacaactttttgtttgg |
147 |
Q |
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| T |
39227380 |
ttgatttatcaacaaataaactcactggattagtacctaaatctttatgtcttggaaaaaggttaaagattctaatcttgcttaacaattttttgtttgg |
39227281 |
T |
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| Q |
148 |
ttctttacctaatgatcttggtcaatgctacacactccaaagagttagaattggtcaaaactatttcactggttcaat |
225 |
Q |
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| T |
39227280 |
ttctttgcctaatgagtttggtcaatgttacacacttcaaagagttcgtttaggacaaaactatttaacaggttcaat |
39227203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 25546582 - 25546405
Alignment:
| Q |
48 |
ttgatttatcgacaaataaactcactggaatattgccaaaatcactttgctttgggaagagactaaagattttgatcttgcttaacaactttttgtttgg |
147 |
Q |
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|||||||||| |||||||||||||||||| || | || ||||| | || |||| || || |||||||| | |||||||||||||| ||||||||||| |
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| T |
25546582 |
ttgatttatcaacaaataaactcactggattagtacctaaatctttatgtcttggaaaaaggttaaagattctaatcttgcttaacaattttttgtttgg |
25546483 |
T |
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| Q |
148 |
ttctttacctaatgatcttggtcaatgctacacactccaaagagttagaattggtcaaaactatttcactggttcaat |
225 |
Q |
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| T |
25546482 |
ttctttgcccaatgagtttggtcaatgttacacacttcaaagagttcgtttaggacaaaactatttaacaggttcaat |
25546405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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