View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3121_high_9 (Length: 509)
Name: NF3121_high_9
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Complemental strand, 11592887 - 11592414
Alignment:
| Q |
16 |
aaagcttcagaaacaattgataagaagagagatattgtttattcaaacaaagaagcagtgaaagaagttggtaacaatgttgttgatgcagttgataatg |
115 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592887 |
aaagcctcagaaacaattgataagaagagagatattgttaattcaaacaaagaagcagtgaaagaagttggtaacaatgttgttgatgcagttgataatg |
11592788 |
T |
|
| Q |
116 |
ctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcattagaaaaagggaaagagatgggacaaacgtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
11592787 |
ctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcattagaaaaaggcaaagaaatgggacaaacgtt |
11592688 |
T |
|
| Q |
216 |
taaggaacatgttgttcacaacgtgaacgaagcgaaagacggtgtgaagaagtttatgtcattatcaatggagagagttgaatcattgatgagtttgttg |
315 |
Q |
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| T |
11592687 |
taaagaacatgttgttcacaacgtgaccgaggcgaaagacggtgtgaagaagtttatgtcattatcaatggagagagttgaatcattgatgagtttgttg |
11592588 |
T |
|
| Q |
316 |
aatttattgggattttcaagtggttatggaatgaatgtttggataacatttgtttctagttatgttttgtctagggttatgccaagacaacaatttgctg |
415 |
Q |
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| T |
11592587 |
aatttgttgggattttcaagtggttatggaatgaatgtttggatcacatttgtttctagttatgttttgtctagggttatgccaagacaacaatttgctg |
11592488 |
T |
|
| Q |
416 |
tggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggtcat |
489 |
Q |
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| T |
11592487 |
tggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggtcat |
11592414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Original strand, 11645232 - 11645705
Alignment:
| Q |
16 |
aaagcttcagaaacaattgataagaagagagatattgtttattcaaacaaagaagcagtgaaagaagttggtaacaatgttgttgatgcagttgataatg |
115 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645232 |
aaagcctcagaaacaattgataagaagagagatattgttaattcaaacaaagaagcagtgaaagaagttggtaacaatgttgttgatgcagttgataatg |
11645331 |
T |
|
| Q |
116 |
ctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcattagaaaaagggaaagagatgggacaaacgtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
11645332 |
ctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcattagaaaaaggcaaagaaatgggacaaacgtt |
11645431 |
T |
|
| Q |
216 |
taaggaacatgttgttcacaacgtgaacgaagcgaaagacggtgtgaagaagtttatgtcattatcaatggagagagttgaatcattgatgagtttgttg |
315 |
Q |
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| T |
11645432 |
taaagaacatgttgttcacaacgtgaccgaggcgaaagacggtgtgaagaagtttatgtcattatcaatggagagagttgaatcattgatgagtttgttg |
11645531 |
T |
|
| Q |
316 |
aatttattgggattttcaagtggttatggaatgaatgtttggataacatttgtttctagttatgttttgtctagggttatgccaagacaacaatttgctg |
415 |
Q |
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| T |
11645532 |
aatttgttgggattttcaagtggttatggaatgaatgtttggatcacatttgtttctagttatgttttgtctagggttatgccaagacaacaatttgctg |
11645631 |
T |
|
| Q |
416 |
tggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggtcat |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645632 |
tggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggtcat |
11645705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 37180726 - 37181056
Alignment:
| Q |
16 |
aaagcttcagaaacaattgataagaagagagatattgtttattcaaacaaagaagcagtgaaagaagttggtaacaatgttgttgatgcagttgataatg |
115 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180726 |
aaagcctcataaacaattgataagaagagagatattgtttatgcaaacaaagaagcagtgaaagaagttggtaacaatgttgttgatgcagttgataatg |
37180825 |
T |
|
| Q |
116 |
ctaaagagagagtttatgataaagcaaatgatgtttatgataatgttcaagaatacacaaaagggtcattagaaaaagg-gaaagagatgggacaaacgt |
214 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||| | ||||||||||| | |
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| T |
37180826 |
ttaaagagaaagtttatgataaagctaatgatgtttatgataatgttcaagattccacaaaagggtcattggaaaaaggaaaaaaaaatgggacaaacat |
37180925 |
T |
|
| Q |
215 |
ttaaggaacatgttgttcacaacgtgaacgaagcgaaagacggtgtgaagaagtttatgtcattatcaatggagagagttgaatcattgatgagtttgtt |
314 |
Q |
| |
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| ||||||||||||| | ||||||| ||| | |||||||||| ||||||||| |||||||||| |||||||||||||||||||||| || ||| |
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| T |
37180926 |
tgaaggaacatgttggt---aacgtgaccgagacataagacggtgtaaagaagtttgtgtcattatctatggagagagttgaatcattgacgaaagagtt |
37181022 |
T |
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| Q |
315 |
gaatttatt-gggattttcaagtggttatggaat |
347 |
Q |
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|||||| || ||||||| |||||||||||||||| |
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| T |
37181023 |
gaatttgttagggatttgcaagtggttatggaat |
37181056 |
T |
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