View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_low_1 (Length: 680)

Name: NF3121_low_1
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_low_1
NF3121_low_1
[»] chr5 (3 HSPs)
chr5 (50-513)||(26578826-26579289)
chr5 (593-665)||(26578672-26578746)
chr5 (109-379)||(34918961-34919231)
[»] chr4 (7 HSPs)
chr4 (87-382)||(36296478-36296773)
chr4 (87-382)||(35072705-35073000)
chr4 (236-376)||(35097688-35097828)
chr4 (290-382)||(35106860-35106952)
chr4 (290-349)||(36936005-36936064)
chr4 (290-359)||(36940703-36940772)
chr4 (236-316)||(35098037-35098117)
[»] chr6 (2 HSPs)
chr6 (87-382)||(24014204-24014499)
chr6 (290-376)||(24040964-24041050)
[»] chr1 (1 HSPs)
chr1 (236-379)||(3123076-3123219)


Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 50 - 513
Target Start/End: Complemental strand, 26579289 - 26578826
Alignment:
Q  50 gattttgaagacttagcctgtaatctgaacaggtttcacatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatccca 149  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26579289 gattttgaagacttagcctgtaatctgaacaggcttcacatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatccca 26579190  T
Q  150 gctttcacctcatccaccttagcattctccggcaacctaaaccgccggagaaaacttccctggcttcgttcaacgcgatgccaggtatcgttcttgtctt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26579189 gctttcacctcatccaccttagcattctccggcaacctaaaccgccggagaaaacttccctggcttcgttcaacgcgatgccaggtatcattcttgtctt 26579090  T
Q  250 ccttctcaattttcctctctccacttatcttcaaaacatgatcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaa 349  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26579089 ccttctcaattttcctctctccacttatcttcaaaacacgatcctcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaa 26578990  T
Q  350 gacgtgtgcttccggtgtttccttccagtcaatgcgcgcattagcgaacgatgatgtttcgttggtggtagggaagttttggaatggatcccataagtct 449  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26578989 gatgtgtgcttccggtgtttccttccagtcagtgcgcgcattagcgaacgatgatgtttcgttggtggtagggaagttttggaatggatcccataagtct 26578890  T
Q  450 agagagaatgggtcgaagatgttgcttcttcgtccggttccgaacacacttggaatgatagaca 513  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26578889 agagagaatgggtcgaagatgttgcttcttcgtccggttccgaagacacttggaatgatagaca 26578826  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 593 - 665
Target Start/End: Complemental strand, 26578746 - 26578672
Alignment:
Q  593 atgaggaaatg--gggtgtgtgtgagagctttatatagaaggcgatgggagtgatttggtcactatagatgatgt 665  Q
    |||||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26578746 atgaggaaatggtgtgtgtgtgtgagagctttatatagagggcgatgggagtgatttggtcactatagatgatgt 26578672  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 379
Target Start/End: Complemental strand, 34919231 - 34918961
Alignment:
Q  109 ccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacctaaaccgccggagaaaacttcc 208  Q
    ||||||||||| |||||||||| || ||||||||||| |||||||| |||| |||||  ||| ||||||| ||||||||||||| ||  |  ||||||||    
T  34919231 ccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctca-taaacttcc 34919133  T
Q  209 ctg-gcttcgttcaacgcgatgccaggtatcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaacatgatcatcttcaatctcaac 307  Q
    | |  ||||  ||||| ||||||||  |||| | ||| ||||||| |||  | || ||||| |||||||||| ||| ||||   ||||||| || |||||    
T  34919132 cagaacttctctcaacacgatgccacttatcatccttctcttcctgctctttgtttctctcaccacttatctgcaacacatttccatcttctatttcaac 34919033  T
Q  308 cttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtc 379  Q
     |||||||| || |||||||  || ||||||||  |  |||| ||||| |||||  ||||||| ||||||||    
T  34919032 tttcacttcttctttcttcaaaccaggaagatctacactgaacacgtgagcttcttgtgtttctttccagtc 34918961  T

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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 87 - 382
Target Start/End: Original strand, 36296478 - 36296773
Alignment:
Q  87 acatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacc 186  Q
    |||||||| |||||||| ||  | || |||||| | ||||| || ||||||||||||||  |||||||||||| ||||| ||| ||||| || ||||| |    
T  36296478 acatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacctgatccatcttggcattttcgggcaatc 36296577  T
Q  187 taaaccgccggagaaaacttccctggcttcgttcaacgcgatgccaggtatcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaac 286  Q
    | |||| ||  | |||  ||||   ||| || || |||||||||||    | |||||||||||| |||||||  |||||||||||||| ||||  | |||    
T  36296578 tgaacctcctcataaactttccactgctacgctccacgcgatgccattggttgttcttgtcttctttctcaacgttcctctctccactaatctgaagaac 36296677  T
Q  287 atgatcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtcaat 382  Q
        ||||||||||| |||||||||||||| ||||||||||  || |||||||| ||||| || ||||||||||| || || |||||||| |||||    
T  36296678 tctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttctggggtctccttccaatcaat 36296773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 382
Target Start/End: Original strand, 35072705 - 35073000
Alignment:
Q  87 acatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacc 186  Q
    |||||||| |||||||| ||  | || |||||| ||||||| || ||||||||||||||  |||||||||| | |||||  || |||||||| ||  | |    
T  35072705 acatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggttatc 35072804  T
Q  187 taaaccgccggagaaaacttccctggcttcgttcaacgcgatgccaggtatcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaac 286  Q
    |||||| ||  |  ||  ||||   ||| || || || ||||||||   ||| ||||| ||||| || ||||| |||||||| || |||||||  | |||    
T  35072805 taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaac 35072904  T
Q  287 atgatcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtcaat 382  Q
       |||||||||||| |||||||||||||||||||||||||  || |||||||| || ||||| || || ||||| || || |||||||| |||||    
T  35072905 cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaatcaat 35073000  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 35097828 - 35097688
Alignment:
Q  236 atcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaacatgatcatcttcaatctcaaccttcacttcctccttcttcacgccggga 335  Q
    ||||||||| ||||| |||||||  ||||||||||| |||||||  | |||   |||| ||||||| |||||||||||||| ||||||||||  || |||    
T  35097828 atcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccagga 35097729  T
Q  336 agatcggctttgaagacgtgtgcttccggtgtttccttcca 376  Q
    ||||| || | ||| || |||||||| || || ||||||||    
T  35097728 agatcagcctcgaacacatgtgcttctggggtctccttcca 35097688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 290 - 382
Target Start/End: Complemental strand, 35106952 - 35106860
Alignment:
Q  290 atcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtcaat 382  Q
    |||||||||||| |||||||||||||||||||||||||  || |||||||| || ||||| || || ||||| || || |||||||| |||||    
T  35106952 atcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaatcaat 35106860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 36936005 - 36936064
Alignment:
Q  290 atcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaa 349  Q
    ||||||||||||||| || |||||||||||||||||||  || |||||||| || |||||    
T  36936005 atcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaa 36936064  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 36940703 - 36940772
Alignment:
Q  290 atcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgct 359  Q
    ||||||||||||||| || ||| |||||||||||||||  || |||| ||| || ||||| |||||||||    
T  36940703 atcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgct 36940772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 35098117 - 35098037
Alignment:
Q  236 atcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaacatgatcatcttcaatctcaaccttcacttc 316  Q
    ||||||||| ||||| |||||||  ||||||||||| |||||||  | |||   |||| ||||||| ||||||||||||||    
T  35098117 atcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttc 35098037  T

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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 87 - 382
Target Start/End: Original strand, 24014204 - 24014499
Alignment:
Q  87 acatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacc 186  Q
    |||||||| |||||||| ||  | || |||||| ||||||| || ||||||||||||||  |||||||||| | |||||  || ||||| || |||||||    
T  24014204 acatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattttcgggcaacc 24014303  T
Q  187 taaaccgccggagaaaacttccctggcttcgttcaacgcgatgccaggtatcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaac 286  Q
    | || | ||  |  ||  ||||   ||| || || || ||||||||   ||||||||| ||||| |||||||  ||||||||||| |||||||  | |||    
T  24014304 tgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaac 24014403  T
Q  287 atgatcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtcaat 382  Q
       |||| ||||||| |||||||||||||||||||||||||  || |||||||| || ||||| || |||||||| || || |||||||| |||||    
T  24014404 cctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttccaatcaat 24014499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 376
Target Start/End: Original strand, 24040964 - 24041050
Alignment:
Q  290 atcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttcca 376  Q
    |||||||||||| |||||||||||||| ||||||||||  || |||||||| || ||||| || |||||||| || || ||||||||    
T  24040964 atcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttcca 24041050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 236 - 379
Target Start/End: Complemental strand, 3123219 - 3123076
Alignment:
Q  236 atcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaacatgatcatcttcaatctcaaccttcacttcctccttcttcacgccggga 335  Q
    ||||||||||||||| |||||||   |||| ||||| |||||||  | ||| | |||||||||||| ||||||||||| || ||||||||||  || |||    
T  3123219 atcgttcttgtcttctttctcaacggtcctttctccgcttatctgaagaaccttatcatcttcaatttcaaccttcacctcttccttcttcaaccctgga 3123120  T
Q  336 agatcggctttgaagacgtgtgcttccggtgtttccttccagtc 379  Q
    ||||| |||||||| || ||||||||  | |||||||| |||||    
T  3123119 agatcagctttgaacacatgtgcttctagagtttcctttcagtc 3123076  T

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