View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3121_low_13 (Length: 431)
Name: NF3121_low_13
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 7241480 - 7241658
Alignment:
| Q |
19 |
caattactttcttcaatgcatccaaaatcgtttatatttaatcnnnnnnntcacagtcatcaaagatttatacagaggagtgtgtacaaaggagttcatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7241480 |
caattactttcttcaatgcatccaaaattgtttatatttaatcaaaaaaatcacagtcatcaaagatttaaacagaggagtgtgtacaaaggagttcatc |
7241579 |
T |
|
| Q |
119 |
aaacgtcaaataatagtccatgaaccatgttttgctccctggtcgtggatctattaaaaagaacgtcacaagataaata |
197 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7241580 |
aaacgtaaaatgatagtccatgaaccatgttttgctccctggtcgtggatctattaaaaagaacgtcacaagataaata |
7241658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University