View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_low_16 (Length: 407)

Name: NF3121_low_16
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_low_16
NF3121_low_16
[»] chr7 (8 HSPs)
chr7 (16-407)||(33416744-33417133)
chr7 (328-407)||(33424812-33424891)
chr7 (79-196)||(33411108-33411224)
chr7 (348-407)||(33410897-33410956)
chr7 (79-169)||(33425054-33425145)
chr7 (215-284)||(33427441-33427508)
chr7 (24-56)||(33425227-33425259)
chr7 (24-56)||(33411493-33411525)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 33417133 - 33416744
Alignment:
Q  16 cacagatagtccacgtggttaaataaaaacaaaagaaaactcnnnnnnn-gttcaagtgataatataattagttgtggaaattcaacctcgtcttagtaa 114  Q
    ||||||||||||||||||||||||||||||||||||| | |         |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33417133 cacagatagtccacgtggttaaataaaaacaaaagaatatttttttttttgttcaagtaataatataattagttgtggaaattcaacctcgtcttagtaa 33417034  T
Q  115 aagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgttgaaaaaatctatatacacacatctatataagaattgcac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  33417033 aagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgtcgataaaatctatatacacacatctatataagaattgcac 33416934  T
Q  215 aattcatcaaaatcaaaacaaataacatttgcgcagcatttgctagctagctattcttttgattgagattttatattctagggag-nnnnnnnntcttga 313  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  33416933 aattcatcaaaatcaaaacaaat---atttgcgcagcatttgctagctagctattcttttgattgagattttatattctagggagaaaaaaaaatcttga 33416837  T
Q  314 cactcannnnnnngaagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgat 407  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416836 cactcattttttt-aagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgat 33416744  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 33424891 - 33424812
Alignment:
Q  328 aagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgat 407  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33424891 aagttaatttctacatttagagagaaatattttccaaaatcaaattttgatcaaatggcttcttctcgtgtagttttgat 33424812  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 33411224 - 33411108
Alignment:
Q  79 ataattagttgtggaaattcaacctcgtcttagtaaaagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgttgaa 178  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| ||| ||| ||||||||||| |||  ||     
T  33411224 ataataagttgtggaaattcaacctcgtcttagtaaa-gccgaccaaatccggtagccgtttataatagcaaacaaatattctattattgttgtgacgat 33411126  T
Q  179 aaaatctatatacacaca 196  Q
    |||||| ||| |||||||    
T  33411125 aaaatcaatacacacaca 33411108  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 348 - 407
Target Start/End: Complemental strand, 33410956 - 33410897
Alignment:
Q  348 agagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33410956 agagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgat 33410897  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 33425145 - 33425054
Alignment:
Q  79 ataattagttgtggaaattcaacctcgtcttagtaaaa-gccgaccaaatccggtagccgaatataatagcatacatatactctattattgt 169  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| ||| ||| |||||||||||    
T  33425145 ataataagttgtggaaattcaacctcgtcttagtaaaaagccgaccaaatccggtagccgtttataatagcaaacaaatattctattattgt 33425054  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 33427441 - 33427508
Alignment:
Q  215 aattcatcaaaatcaaaacaaataacatttgcgcagcatttgctagctagctattcttttgattgagatt 284  Q
    ||||||||||| ||||||||| |||||||| || ||||||||||||||||| |||||||| |||||||||    
T  33427441 aattcatcaaa-tcaaaacaa-taacattttcgaagcatttgctagctagcaattcttttcattgagatt 33427508  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 33425259 - 33425227
Alignment:
Q  24 gtccacgtggttaaataaaaacaaaagaaaact 56  Q
    |||||||||||||||||||||||||||||||||    
T  33425259 gtccacgtggttaaataaaaacaaaagaaaact 33425227  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 33411525 - 33411493
Alignment:
Q  24 gtccacgtggttaaataaaaacaaaagaaaact 56  Q
    ||||||||||||||||||||||||| |||||||    
T  33411525 gtccacgtggttaaataaaaacaaatgaaaact 33411493  T

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