View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3121_low_20 (Length: 342)
Name: NF3121_low_20
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 4184384 - 4184071
Alignment:
| Q |
11 |
cacagacacactatacatcaatgtgggtttgcccac-tattcctcaaattaaggaaaaagttcacaaacaaaccaattagtactagaaacagaaagtgga |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4184384 |
cacagtcacactatacatcaatgtgggtttgcccacctattcctcaaattaaggaaaaagttcacaaacaaaccaattagtactagaaacagaaagtgga |
4184285 |
T |
|
| Q |
110 |
accaatttaacaaaaaagctcagggtgacaattattagagaggggacatgatttctccttcatgattttgacgggttaattattggtctatcaacatgct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4184284 |
accaatttaacaaaaaagctcagggtgacaattattagagaggggacatgatttctccttcatgattttgacgggttaattattggtctatcaacatgct |
4184185 |
T |
|
| Q |
210 |
tgtttgtgctggagaacattttatgactctcaacatgcttgtttgtgctagagaacattttttgacgtaaaagattggttaaacttttacggttcatgca |
309 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4184184 |
tgtttgtgctggaaaacattttatgactatcaacatgcttgtttgtgctagagaacattttttgacgtaaaagattggttaaacttttacggttcatgca |
4184085 |
T |
|
| Q |
310 |
actcatcacacttt |
323 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4184084 |
actcatcacacttt |
4184071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University