View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3121_low_22 (Length: 330)
Name: NF3121_low_22
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 10065674 - 10065374
Alignment:
| Q |
20 |
atcatgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactcgaccgaactcaaggctggtgatttttgtggagaggagc |
119 |
Q |
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| T |
10065674 |
atcatgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactcgaccgaactcaaggctggtgatttttgtggagaggagc |
10065575 |
T |
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| Q |
120 |
ttctaacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaactattacggaagttgaagcttttgctctaatgca |
219 |
Q |
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| T |
10065574 |
ttctaacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaactattacggaagttgaagcttttgctctaatgca |
10065475 |
T |
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| Q |
220 |
tgatgacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacactttcaggcaaggcttgatatgttttttcaccttt |
319 |
Q |
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| T |
10065474 |
tgatgacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacactttcaggcaaggcttgatatgttttttcaccttt |
10065375 |
T |
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| Q |
320 |
g |
320 |
Q |
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| T |
10065374 |
g |
10065374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 50 - 305
Target Start/End: Original strand, 48466251 - 48466506
Alignment:
| Q |
50 |
acaaatggtggaagaactggtttctttaactcgaccgaactcaaggctggtgatttttgtggagaggagcttctaacatgggccttggatcctacaacct |
149 |
Q |
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| T |
48466251 |
acaaatggtggaagaactggtttcttcaactcattatttctaatgcctggtgatttttgtggagaggaacttttaacatgggctttggatccaaactcct |
48466350 |
T |
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| Q |
150 |
cttcaaacttacctatttcaactagtacagttgaaactattacggaagttgaagcttttgctctaatgcatgatgacttgaagattgttgcttcccaatt |
249 |
Q |
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| T |
48466351 |
cctcgaatctacctacttcaactagaacagtagaaactatatcagaagttgaagcatttgcactcaaggctgatgacttgaagtttgttgcttcccaatt |
48466450 |
T |
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| Q |
250 |
tcgacgtcttattaacagaaaacaactccaacacactttcaggcaaggcttgatat |
305 |
Q |
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| T |
48466451 |
tagacgtcttatcaacagcaaacaactccaacacactttcaggtatggcttgatat |
48466506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 41395733 - 41395825
Alignment:
| Q |
50 |
acaaatggtggaagaactggtttctttaactcgaccgaactcaaggctggtgatttttgtggagaggagcttctaacatgggccttggatcct |
142 |
Q |
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| T |
41395733 |
acaaacggtggaagaacaggtttcttcaactctgaatacctcaaggctggtgacttctgtggagaggagcttctcacatgggcattagatcct |
41395825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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