View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3121_low_25 (Length: 300)
Name: NF3121_low_25
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_low_25 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 8763045 - 8762757
Alignment:
| Q |
10 |
aagaatattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctcaatttacatcatatatttcaat |
109 |
Q |
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| T |
8763045 |
aagaaaattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctaaatttacatcatatatttcaat |
8762946 |
T |
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| Q |
110 |
aatattataatatcatcattagcagactgaattataatgttgataatttttctgtctctaatttttgtcattatcttaactttctctagtatatcttgca |
209 |
Q |
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| T |
8762945 |
aatattataataacatcattagcagactgaatgataatgttgataatttttctgtctctaatttttgtcattatcttaactttctcgagtatatcttgca |
8762846 |
T |
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| Q |
210 |
aactctaatgctttggtatatataatcacaatacttgcagaagtatcgcatatttctgcgagatgttgcagagaaaggaatggttgaaggc |
300 |
Q |
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| T |
8762845 |
aactctaatgctttggt--atatgatcacaatacttgcagaagtatcgcatatttctgcgagatgttgccgagaaaggaatggttgaaggc |
8762757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 8789524 - 8789239
Alignment:
| Q |
10 |
aagaatattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctcaatttacatcatatatttcaat |
109 |
Q |
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| T |
8789524 |
aagaaaattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaggtcacttacaggtttttcttctcaatttacatcatatatttcaat |
8789425 |
T |
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| Q |
110 |
aatattataatatcatcattagcagactgaattataatgttgataatttttctgtctctaatttttgtcattatcttaactttctctagtatatcttgca |
209 |
Q |
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| T |
8789424 |
aatattataata---tcattagcagactgaatgataatgttgataatttttctgtctctaatttttgtcgttgtcttaactttctctagtatatcttgca |
8789328 |
T |
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| Q |
210 |
aactctaatgctttggtatatataatcacaatacttgcagaagtatcgcatatttctgcgagatgttgcagagaaaggaatggttgaaggc |
300 |
Q |
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| T |
8789327 |
aactctaatgctttag--tatatgatcacaatacttgcagaagtatcgcatatttctgcgagatgttgcagagaaaggaatggttggaggc |
8789239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 8835 - 8918
Alignment:
| Q |
10 |
aagaatattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctcaattta |
93 |
Q |
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| T |
8835 |
aagaaaattttggagataatgaatgttccaaacttaacaagagaaaatgtagccagtcatttacaggtttttcttctcaattta |
8918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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