View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_low_27 (Length: 287)

Name: NF3121_low_27
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_low_27
NF3121_low_27
[»] chr4 (30 HSPs)
chr4 (133-270)||(31307047-31307184)
chr4 (131-270)||(38766112-38766251)
chr4 (136-270)||(14854628-14854762)
chr4 (131-263)||(9012300-9012432)
chr4 (133-265)||(46016177-46016309)
chr4 (131-270)||(45994545-45994684)
chr4 (133-256)||(51626287-51626410)
chr4 (147-258)||(13948587-13948698)
chr4 (129-270)||(35334075-35334216)
chr4 (140-270)||(35972366-35972496)
chr4 (137-265)||(46250540-46250668)
chr4 (131-270)||(38844147-38844286)
chr4 (154-270)||(13686624-13686741)
chr4 (133-270)||(32005127-32005269)
chr4 (141-225)||(33529325-33529409)
chr4 (142-256)||(17135133-17135247)
chr4 (130-270)||(14042852-14042992)
chr4 (150-269)||(45695806-45695925)
chr4 (144-270)||(56447115-56447240)
chr4 (159-272)||(47023423-47023536)
chr4 (210-270)||(11140480-11140540)
chr4 (156-270)||(22189392-22189506)
chr4 (133-270)||(7096119-7096255)
chr4 (152-251)||(22017506-22017605)
chr4 (163-257)||(51853733-51853826)
chr4 (141-243)||(3649034-3649137)
chr4 (140-195)||(15133473-15133528)
chr4 (133-222)||(18841556-18841646)
chr4 (140-176)||(38787752-38787788)
chr4 (215-267)||(48998068-48998120)
[»] chr7 (33 HSPs)
chr7 (133-270)||(29059828-29059965)
chr7 (133-270)||(31492126-31492263)
chr7 (133-251)||(11486725-11486843)
chr7 (129-270)||(21747017-21747157)
chr7 (151-270)||(19477249-19477367)
chr7 (131-259)||(28537424-28537548)
chr7 (152-270)||(8839281-8839399)
chr7 (168-270)||(13254117-13254219)
chr7 (136-264)||(24172236-24172366)
chr7 (131-270)||(35707870-35708008)
chr7 (133-234)||(42741790-42741890)
chr7 (133-267)||(46373699-46373835)
chr7 (131-222)||(37339712-37339803)
chr7 (166-236)||(14545000-14545070)
chr7 (133-259)||(20207531-20207657)
chr7 (139-266)||(23933638-23933765)
chr7 (163-270)||(27484060-27484167)
chr7 (131-217)||(31776494-31776580)
chr7 (133-186)||(28665197-28665250)
chr7 (141-185)||(36821069-36821113)
chr7 (164-259)||(7265325-7265420)
chr7 (192-255)||(40099312-40099375)
chr7 (135-217)||(29428775-29428857)
chr7 (129-270)||(24579429-24579570)
chr7 (203-267)||(2657887-2657951)
chr7 (131-223)||(32469986-32470080)
chr7 (133-268)||(45778889-45779024)
chr7 (152-233)||(4562778-4562859)
chr7 (153-242)||(30614683-30614772)
chr7 (154-270)||(4059695-4059810)
chr7 (207-267)||(40211979-40212039)
chr7 (208-270)||(7190415-7190477)
chr7 (133-225)||(3231287-3231379)
[»] scaffold0182 (1 HSPs)
scaffold0182 (133-270)||(26354-26491)
[»] chr5 (18 HSPs)
chr5 (133-270)||(10591950-10592087)
chr5 (133-252)||(5123479-5123598)
chr5 (133-266)||(31113361-31113494)
chr5 (137-270)||(22187983-22188114)
chr5 (133-259)||(30784967-30785093)
chr5 (129-267)||(18909285-18909416)
chr5 (157-270)||(2798320-2798433)
chr5 (157-270)||(2804487-2804600)
chr5 (138-256)||(35774622-35774740)
chr5 (133-216)||(25983742-25983825)
chr5 (139-226)||(29553606-29553693)
chr5 (156-227)||(36212962-36213033)
chr5 (142-270)||(12336018-12336146)
chr5 (203-270)||(28023494-28023561)
chr5 (142-270)||(10795308-10795436)
chr5 (141-256)||(12682672-12682787)
chr5 (154-237)||(18244640-18244723)
chr5 (151-226)||(32313105-32313180)
[»] chr8 (22 HSPs)
chr8 (133-270)||(2743956-2744093)
chr8 (133-270)||(4125005-4125142)
chr8 (133-270)||(19715706-19715844)
chr8 (133-270)||(13468726-13468863)
chr8 (131-270)||(30936027-30936166)
chr8 (144-270)||(12958077-12958203)
chr8 (131-242)||(7839232-7839343)
chr8 (160-267)||(15682955-15683062)
chr8 (142-266)||(30055991-30056115)
chr8 (154-270)||(36994502-36994618)
chr8 (133-257)||(24988530-24988659)
chr8 (133-186)||(39086859-39086912)
chr8 (129-267)||(44639009-44639147)
chr8 (179-270)||(35207023-35207114)
chr8 (164-257)||(21032333-21032425)
chr8 (133-213)||(8521778-8521857)
chr8 (206-270)||(27121804-27121868)
chr8 (207-266)||(16701434-16701493)
chr8 (181-232)||(29284966-29285017)
chr8 (189-270)||(32422809-32422891)
chr8 (193-226)||(10031025-10031058)
chr8 (207-267)||(8878150-8878210)
[»] chr2 (38 HSPs)
chr2 (133-270)||(42745097-42745234)
chr2 (141-270)||(5394420-5394548)
chr2 (129-270)||(18105340-18105480)
chr2 (133-267)||(31579210-31579344)
chr2 (142-270)||(9438126-9438254)
chr2 (195-270)||(44732616-44732691)
chr2 (131-251)||(17981540-17981659)
chr2 (129-216)||(25423821-25423908)
chr2 (138-261)||(38372980-38373101)
chr2 (140-270)||(993777-993906)
chr2 (189-267)||(12133267-12133345)
chr2 (190-270)||(7157521-7157601)
chr2 (210-270)||(37568785-37568845)
chr2 (133-264)||(37179982-37180108)
chr2 (152-264)||(38743767-38743879)
chr2 (144-239)||(7020352-7020446)
chr2 (163-262)||(44752205-44752304)
chr2 (152-270)||(14121882-14122000)
chr2 (133-204)||(37092176-37092247)
chr2 (141-223)||(12233064-12233146)
chr2 (192-270)||(17627582-17627660)
chr2 (192-270)||(17672654-17672732)
chr2 (131-210)||(14551557-14551636)
chr2 (140-255)||(38463993-38464108)
chr2 (153-270)||(39401070-39401187)
chr2 (192-270)||(17658485-17658563)
chr2 (140-225)||(14412789-14412874)
chr2 (149-242)||(35476224-35476317)
chr2 (153-204)||(17655750-17655801)
chr2 (228-270)||(28365972-28366014)
chr2 (146-224)||(34386552-34386630)
chr2 (192-242)||(39314497-39314547)
chr2 (139-216)||(13835444-13835521)
chr2 (207-256)||(13986992-13987041)
chr2 (207-256)||(13992890-13992939)
chr2 (135-180)||(44814951-44814996)
chr2 (139-179)||(1682136-1682176)
chr2 (168-256)||(33757014-33757102)
[»] chr3 (27 HSPs)
chr3 (133-270)||(27763744-27763881)
chr3 (131-252)||(20861289-20861410)
chr3 (133-270)||(30995946-30996083)
chr3 (133-270)||(48204292-48204429)
chr3 (133-270)||(25224722-25224859)
chr3 (131-256)||(55123134-55123259)
chr3 (133-270)||(38331151-38331288)
chr3 (133-270)||(22288258-22288395)
chr3 (133-255)||(1642644-1642766)
chr3 (133-267)||(40294638-40294772)
chr3 (133-206)||(8757431-8757504)
chr3 (138-259)||(43621297-43621420)
chr3 (138-257)||(48210946-48211065)
chr3 (164-259)||(15283106-15283200)
chr3 (139-270)||(39950235-39950366)
chr3 (188-270)||(38088658-38088740)
chr3 (163-257)||(15446028-15446126)
chr3 (133-265)||(11767138-11767270)
chr3 (156-257)||(14352590-14352694)
chr3 (133-257)||(22288557-22288681)
chr3 (141-257)||(46725461-46725576)
chr3 (133-185)||(40318430-40318482)
chr3 (212-270)||(22755667-22755725)
chr3 (133-225)||(25739155-25739248)
chr3 (131-204)||(44941244-44941316)
chr3 (141-243)||(23189515-23189617)
chr3 (201-259)||(42514638-42514698)
[»] chr6 (19 HSPs)
chr6 (131-260)||(12836876-12837005)
chr6 (131-270)||(12411171-12411310)
chr6 (131-266)||(28099270-28099405)
chr6 (133-270)||(21910228-21910364)
chr6 (133-254)||(31412161-31412282)
chr6 (166-270)||(423678-423782)
chr6 (155-270)||(21028982-21029101)
chr6 (156-256)||(25084071-25084171)
chr6 (134-266)||(31107475-31107607)
chr6 (62-134)||(10604492-10604568)
chr6 (142-216)||(9536844-9536918)
chr6 (151-225)||(1534320-1534394)
chr6 (155-236)||(21028845-21028924)
chr6 (154-252)||(28933179-28933277)
chr6 (154-270)||(3237943-3238058)
chr6 (193-270)||(5944865-5944942)
chr6 (141-251)||(17177180-17177290)
chr6 (133-266)||(278419-278551)
chr6 (133-270)||(15614554-15614691)
[»] chr1 (37 HSPs)
chr1 (133-255)||(36806649-36806771)
chr1 (133-270)||(18428123-18428259)
chr1 (134-266)||(9780971-9781103)
chr1 (141-270)||(16756105-16756234)
chr1 (140-259)||(46864125-46864244)
chr1 (140-233)||(42297430-42297523)
chr1 (139-259)||(22022154-22022274)
chr1 (135-263)||(28724702-28724830)
chr1 (141-270)||(12035572-12035702)
chr1 (133-259)||(39547345-39547471)
chr1 (141-270)||(45806259-45806388)
chr1 (140-257)||(7242795-7242912)
chr1 (133-222)||(15642526-15642615)
chr1 (140-270)||(10750621-10750750)
chr1 (140-222)||(44913180-44913262)
chr1 (146-259)||(31733685-31733798)
chr1 (133-270)||(32534106-32534242)
chr1 (207-263)||(24801411-24801467)
chr1 (207-259)||(32883625-32883677)
chr1 (131-222)||(10367575-10367666)
chr1 (133-218)||(2044472-2044557)
chr1 (213-270)||(29124768-29124825)
chr1 (155-267)||(25655267-25655379)
chr1 (150-266)||(36086884-36087000)
chr1 (154-259)||(10841051-10841157)
chr1 (175-256)||(36522259-36522340)
chr1 (141-237)||(61161-61256)
chr1 (133-197)||(49071673-49071737)
chr1 (207-270)||(36982378-36982441)
chr1 (215-265)||(48728057-48728107)
chr1 (133-198)||(6643877-6643942)
chr1 (166-227)||(32883561-32883622)
chr1 (193-270)||(35692508-35692585)
chr1 (149-197)||(6607691-6607739)
chr1 (193-258)||(28286474-28286540)
chr1 (162-226)||(33059736-33059800)
chr1 (207-259)||(40019275-40019327)
[»] scaffold0009 (2 HSPs)
scaffold0009 (139-223)||(27212-27296)
scaffold0009 (218-269)||(32330-32381)
[»] scaffold0071 (1 HSPs)
scaffold0071 (163-257)||(16066-16164)
[»] scaffold0189 (1 HSPs)
scaffold0189 (182-266)||(10979-11063)
[»] scaffold0013 (1 HSPs)
scaffold0013 (133-197)||(29133-29197)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 31307047 - 31307184
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  31307047 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 31307146  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31307147 gcatgcccaaggctggattcgaacccaggaccttggtt 31307184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 38766251 - 38766112
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||    
T  38766251 tataaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctg 38766152  T
Q  231 ctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  38766151 ctgcatgcccaaggctggattcaaacccaggaccttggtt 38766112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 136 - 270
Target Start/End: Complemental strand, 14854762 - 14854628
Alignment:
Q  136 accgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||| |||||||||||||||||||||  |||||||    
T  14854762 accgggtatcctccgcgcgcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgca 14854663  T
Q  236 tgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||| |||||||||    
T  14854662 tgcccaaggctggattcgaacccagaaccttggtt 14854628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 131 - 263
Target Start/End: Complemental strand, 9012432 - 9012300
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| ||||||||| ||||||||||||||||| |||||||    
T  9012432 tataaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactg 9012333  T
Q  231 ctgcatgcccaaggctggattcgaacccaggac 263  Q
    |||||||||||||||| ||||||||||||||||    
T  9012332 ctgcatgcccaaggctagattcgaacccaggac 9012300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 46016309 - 46016177
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| |||||||||||| ||||||||| | ||||||||| | ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  46016309 taaatcgggtatcctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 46016210  T
Q  233 gcatgcccaaggctggattcgaacccaggacct 265  Q
    |||||||||||||||||||||||||||||||||    
T  46016209 gcatgcccaaggctggattcgaacccaggacct 46016177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 45994684 - 45994545
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    ||||||| |||||||||  ||| |||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||    
T  45994684 tataaactgggtatccttggcgtgcaactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttg 45994585  T
Q  231 ctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
     |||||||||||||||||||||||| ||||||||||||||    
T  45994584 ttgcatgcccaaggctggattcgaatccaggaccttggtt 45994545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 133 - 256
Target Start/End: Original strand, 51626287 - 51626410
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||  |||||||||| |||||| |||||||||| |||||||||||||||    
T  51626287 taaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgct 51626386  T
Q  233 gcatgcccaaggctggattcgaac 256  Q
    ||||||||||||||||||||||||    
T  51626387 gcatgcccaaggctggattcgaac 51626410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 13948587 - 13948698
Alignment:
Q  147 tccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggct 246  Q
    ||||||||||||||||||||||||||||||||||||||||| |  ||||||| ||| || |||||||||||||||||||||||||||||| |||||||||    
T  13948587 tccgcgcgcaactgcagagactaatccctcgagcattgtgagattcaaatggacggtagactctccctaagagttttaacactgctgcatacccaaggct 13948686  T
Q  247 ggattcgaaccc 258  Q
    ||||||||||||    
T  13948687 ggattcgaaccc 13948698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 129 - 270
Target Start/End: Original strand, 35334075 - 35334216
Alignment:
Q  129 tttataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacac 228  Q
    |||||||||||| |||||| | ||||||||||| ||||||||||||||||| ||||||  ||||||||||||||| | ||||| |||||||||||||| |    
T  35334075 tttataaaccggatatccttcacgcgcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaactc 35334174  T
Q  229 tgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||| || |||||| || |||||||||    
T  35334175 tgctgcatgcccaaggctgaatacgaaccaagaaccttggtt 35334216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 35972496 - 35972366
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcc 239  Q
    |||||||||||| ||||||||| |||||||||||||||| ||| |||  ||||||||||||||||  |||||||||| ||||||||| |||||| |||||    
T  35972496 ggtatcctccgcacgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcc 35972397  T
Q  240 caaggctggattcgaacccaggaccttggtt 270  Q
    || ||||||||||||||||| ||||||||||    
T  35972396 catggctggattcgaacccaagaccttggtt 35972366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 46250540 - 46250668
Alignment:
Q  137 ccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcat 236  Q
    |||| |||||||| ||| |||| || ||||||||| | |||||||| |||  |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  46250540 ccggttatcctccacgcacaaccgcggagactaattcttcgagcatcgtgggacccaaatgggcggcaggctttccataagagttttaacactgctgcat 46250639  T
Q  237 gcccaaggctggattcgaacccaggacct 265  Q
    ||||||| ||||||||||||| |||||||    
T  46250640 gcccaagactggattcgaacctaggacct 46250668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 270
Target Start/End: Original strand, 38844147 - 38844286
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    ||||| |||||||||||| ||||| ||| | ||||||||||| |||||||||||||     |||||||||||||| |||| ||||||||||||||| |||    
T  38844147 tataatccgggtatcctctgcgcgtaacagtagagactaatctctcgagcattgtgggggtcaaatgggcggcagactcttcctaagagttttaacgctg 38844246  T
Q  231 ctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
     ||||||||||| ||||||||||||| || ||||||||||    
T  38844247 ttgcatgcccaaagctggattcgaactcatgaccttggtt 38844286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 13686741 - 13686624
Alignment:
Q  154 gcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccct-aagagttttaacactgctgcatgcccaaggctggattc 252  Q
    |||||||  |||||||||| ||||||| |||||| |||||||||| |||||  |||||||| |||||||||||| |||||||| |||||||| |||||||    
T  13686741 gcaactgtggagactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattc 13686642  T
Q  253 gaacccaggaccttggtt 270  Q
    ||||||||||||||||||    
T  13686641 gaacccaggaccttggtt 13686624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 32005127 - 32005269
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg-- 230  Q
    |||||||||||||||||||||  || ||| |||||||||| |||||||||| ||| | | |||| |||||||| ||||||||||||||||||||||||      
T  32005127 taaaccgggtatcctccgcgcataattgcggagactaatctctcgagcattttgagatctaaataggcggcagactctccctaagagttttaacactgat 32005226  T
Q  231 ---ctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
        ||||||||||| |||| |||||||| |||||| ||||||    
T  32005227 gcaatgcatgcccaaagctgaattcgaactcaggactttggtt 32005269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 33529409 - 33529325
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaa 225  Q
    |||||||||| |||||||||| |||||||||||||| || ||||||  |||||||||||||||| ||||||||||||||||||||    
T  33529409 gtatcctccgtgcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaagagttttaa 33529325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 17135247 - 17135133
Alignment:
Q  142 tatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccca 241  Q
    ||||||||| ||||||||   |||||||||||||||||  || ||  || |||||| ||||||  |||||||||||||||||||| ||||||||||| ||    
T  17135247 tatcctccgtgcgcaacttttgagactaatccctcgagtcttctgggactcaaatgcgcggcaaactctccctaagagttttaacgctgctgcatgcaca 17135148  T
Q  242 aggctggattcgaac 256  Q
    |||||||||||||||    
T  17135147 aggctggattcgaac 17135133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 270
Target Start/End: Complemental strand, 14042992 - 14042852
Alignment:
Q  130 ttataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacact 229  Q
    |||||||||||| |||||| ||||| |||  | ||||| ||||||| |||||||||| || |||||||| || || | |||||| |||||||| ||| |     
T  14042992 ttataaaccgggcatcctctgcgcgtaaccacggagacaaatcccttgagcattgtggaatccaaatggacgacatgttctccccaagagtttaaacgcg 14042893  T
Q  230 gctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||| || ||||||||||||| || ||||||    
T  14042892 gctgcatgcccaagacttgattcgaacccagaacgttggtt 14042852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 150 - 269
Target Start/End: Original strand, 45695806 - 45695925
Alignment:
Q  150 gcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctgga 249  Q
    ||||||||||||| |||||||||| || ||| ||||  ||||||||||| || || ||||||| ||| | ||||||| ||||| ||||| ||||| ||||    
T  45695806 gcgcgcaactgcatagactaatccatcaagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgctcaaggttgga 45695905  T
Q  250 ttcgaacccaggaccttggt 269  Q
    ||| ||||||||||||||||    
T  45695906 ttcaaacccaggaccttggt 45695925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 270
Target Start/End: Original strand, 56447115 - 56447240
Alignment:
Q  144 tcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaag 243  Q
    ||||| |||||||| |||| ||| ||||||||| ||  ||||| | || |||||||  |||  |||||||||||||||||||||||||||||||||||      
T  56447115 tcctctgcgcgcaattgcatagattaatccctcaagtcttgtggatcc-aaatgggtagcaaactctccctaagagttttaacactgctgcatgcccata 56447213  T
Q  244 gctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||| ||||| ||||||    
T  56447214 gctggattcgaacctaggactttggtt 56447240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 47023536 - 47023423
Alignment:
Q  159 tgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccc 258  Q
    ||||||||||||||| |||||  |||||  |||||||||| || ||  ||||||||||||||||||||  || |||||||| ||| ||||||| |||||     
T  47023536 tgcagagactaatccttcgagtcttgtgggacccaaatggacgacaaactctccctaagagttttaactttgttgcatgcctaagtctggattggaacca 47023437  T
Q  259 aggaccttggttga 272  Q
    ||||||||||||||    
T  47023436 aggaccttggttga 47023423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 11140540 - 11140480
Alignment:
Q  210 tccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  11140540 tccctaagagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggtt 11140480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 270
Target Start/End: Original strand, 22189392 - 22189506
Alignment:
Q  156 aactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaa 255  Q
    |||| ||||||||||| |||||||| |||||  ||||| || |||||||  |||| ||||||||||||||   |||||||||| ||||| ||||||||||    
T  22189392 aactacagagactaattcctcgagccttgtgggacccatataggcggcaatctctacctaagagttttaatgttgctgcatgcacaaggttggattcgaa 22189491  T
Q  256 cccaggaccttggtt 270  Q
    | | |||||||||||    
T  22189492 ctctggaccttggtt 22189506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 7096255 - 7096119
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| |||||||| |||||| |||||||   ||||||||| || ||||||||| | ||| |||||||||| | |||||||||||||||||||||  ||||    
T  7096255 taaatcgggtatc-tccgcgtgcaactgtgcagactaatctcttgagcattgtaagacctaaatgggcggtaagctctccctaagagttttaactttgct 7096157  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||| | |||| ||| |||| ||||||  |||||||||    
T  7096156 gcatactcaagactgtattcaaacccaaaaccttggtt 7096119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 22017605 - 22017506
Alignment:
Q  152 gcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 251  Q
    ||||||||| ||||| ||||| ||||| |||||||  |  ||||| ||||||| ||| |||||||| |||||||||||||| ||| | |||| |||||||    
T  22017605 gcgcaactgtagagattaatcgctcgatcattgtgtgattcaaataggcggcaagctttccctaagggttttaacactgctacatactcaagactggatt 22017506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 51853826 - 51853733
Alignment:
Q  163 gagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacc 257  Q
    ||||||||||||||||| ||||||| ||| |||||| | |||  || ||| ||||||||||||    |||||||||||||||||| |||||||||    
T  51853826 gagactaatccctcgagtattgtgagaccaaaatggaccgcaaactttcc-taagagttttaaggaagctgcatgcccaaggctgaattcgaacc 51853733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 3649034 - 3649137
Alignment:
Q  141 gtatcctccgcgcgcaact-gcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcc 239  Q
    |||||||||| | |||||| | |||||||||||| |||||  |||||  | ||||||| |||| |  ||||||||||||||||||||  || ||||||||    
T  3649034 gtatcctccgtgtgcaacttgtagagactaatccttcgagtcttgtgcgatccaaatgagcggaaaactctccctaagagttttaacgttgttgcatgcc 3649133  T
Q  240 caag 243  Q
    ||||    
T  3649134 caag 3649137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 15133528 - 15133473
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaa 195  Q
    |||||||||||||||||||||| |||||||||| ||| | |||||||  |||||||    
T  15133528 ggtatcctccgcgcgcaactgcggagactaatctctcaaacattgtgggacccaaa 15133473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 18841646 - 18841556
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaact-gcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttt 222  Q
    |||||| ||||||||||| |||||||| || ||||||||||||| |||| ||||   | |||||| |||||||  |||| |||||||||||    
T  18841646 taaaccaggtatcctccgtgcgcaacttgcggagactaatcccttgagccttgtaggatccaaattggcggcaaactctacctaagagttt 18841556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 38787788 - 38787752
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctc 176  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  38787788 ggtatcctctgcgcgcaactgcaaagactaatccctc 38787752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 48998068 - 48998120
Alignment:
Q  215 aagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttg 267  Q
    |||||||||||| ||| |||||| ||||| || ||||||||| ||||||||||    
T  48998068 aagagttttaacgctgatgcatgtccaagactcgattcgaactcaggaccttg 48998120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 29059965 - 29059828
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  29059965 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 29059866  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29059865 gcatgcccaaggctggattcgaacccaggaccttggtt 29059828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 31492263 - 31492126
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  31492263 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgct 31492164  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31492163 gcatgcccaaggctggattcgaacccaggaccttggtt 31492126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 11486725 - 11486843
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||||||||||||||| ||||| | ||||||||||||||| | |    
T  11486725 taaaccgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaagctcttcttaagagttttaacacagat 11486824  T
Q  233 gcatgcccaaggctggatt 251  Q
    |||||||||||||||||||    
T  11486825 gcatgcccaaggctggatt 11486843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 129 - 270
Target Start/End: Original strand, 21747017 - 21747157
Alignment:
Q  129 tttataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacac 228  Q
    |||||||||| |||||||||||||| |||||||  |||||||||||||||| ||||||  ||||||||||| || ||||||||||||||||||||||| |    
T  21747017 tttataaaccaggtatcctccgcgcacaactgcgaagactaatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaacgc 21747116  T
Q  229 tgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||| ||||||| || |||||||||| ||||||||||||||||    
T  21747117 tgcagcatgcctaaagctggattcg-acccaggaccttggtt 21747157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 19477249 - 19477367
Alignment:
Q  151 cgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggat 250  Q
    ||||||||||| |||||||||||||| |||||||||  |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  19477249 cgcgcaactgcggagactaatccctc-agcattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggat 19477347  T
Q  251 tcgaacccaggaccttggtt 270  Q
    || ||||||| |||||||||    
T  19477348 tcaaacccagaaccttggtt 19477367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 28537548 - 28537424
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    ||||||||||||||||| |||| |||||||| |||||||||||||| ||||| |    ||||||||||||||||||||||||||||||||||||||  ||    
T  28537548 tataaaccgggtatccttcgcgtgcaactgcggagactaatccctcaagcatgg----acccaaatgggcggcaggctctccctaagagttttaacgttg 28537453  T
Q  231 ctgcatgcccaaggctggattcgaaccca 259  Q
     ||||||||||||||||||||||||||||    
T  28537452 ttgcatgcccaaggctggattcgaaccca 28537424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 152 - 270
Target Start/End: Original strand, 8839281 - 8839399
Alignment:
Q  152 gcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 251  Q
    |||||| ||| ||||||||||||||||| ||||||  | | |||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  8839281 gcgcaattgcggagactaatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctggatt 8839380  T
Q  252 cgaacccaggaccttggtt 270  Q
    |||||||||||||||||||    
T  8839381 cgaacccaggaccttggtt 8839399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 13254117 - 13254219
Alignment:
Q  168 taatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttg 267  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||    
T  13254117 taatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttg 13254216  T
Q  268 gtt 270  Q
    |||    
T  13254217 gtt 13254219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 264
Target Start/End: Complemental strand, 24172366 - 24172236
Alignment:
Q  136 accgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctcccta--agagttttaacactgctg 233  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||||||  | |||| ||||||||| |||||| |||  |||||||||||  || ||    
T  24172366 accgggtatactccgcgcgcaactgcatagactaatccttcgagcattgtgggatccaagtgggcggcaagctctcactaagagagttttaacgttgttg 24172267  T
Q  234 catgcccaaggctggattcgaacccaggacc 264  Q
    ||||||||||| |||||||||||||||||||    
T  24172266 catgcccaaggttggattcgaacccaggacc 24172236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 35708008 - 35707870
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||   | | ||||||| |||| | ||||||||||| |||||||  ||    
T  35708008 tataaaccgggtatcctccacgcgcaactgcagagactaatccctcgagcattgtaggatctaaatgggaggcaagttctccctaagaattttaacgttg 35707909  T
Q  231 ctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
     |||||| |||| | |||||||||| |||| |||||||||    
T  35707908 ttgcatgtccaaagttggattcgaa-ccagaaccttggtt 35707870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 42741790 - 42741890
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||  ||||||||||| |||||| ||||||||| |||||||||||||||    
T  42741790 taaatcgggtatcctccgcgcgcaactgcagagattaatccctcgagtattatg-gacccaaatgggtggcaggttctccctaaaagttttaacactgct 42741888  T
Q  233 gc 234  Q
    ||    
T  42741889 gc 42741890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 133 - 267
Target Start/End: Complemental strand, 46373835 - 46373699
Alignment:
Q  133 taaaccgggtatcctccgcgcgc--aactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    |||| |||||||| |||||||||  ||||||  ||||||||| |||||||||||||  |||||||| ||||||| |||||||||| ||||||||||  ||    
T  46373835 taaatcgggtatcttccgcgcgcgaaactgccaagactaatctctcgagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatg 46373736  T
Q  231 ctgcatgcccaaggctggattcgaacccaggaccttg 267  Q
     || ||||||||| |||||||||||||||||| ||||    
T  46373735 ttgtatgcccaagactggattcgaacccaggatcttg 46373699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 37339712 - 37339803
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttt 222  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||||||| ||  |||||||| |||||||| ||||| ||||||||||    
T  37339712 tataaatcgggtatcctccgtgcgcaactgcggagactaatccctcgagcattatgggacccaaataggcggcagactctcactaagagttt 37339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 14545070 - 14545000
Alignment:
Q  166 actaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcat 236  Q
    |||||||| ||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  14545070 actaatccatcgagcattgtgggacccaaatggacggcaggctctccctaagagttttaacactgctgcat 14545000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 20207657 - 20207531
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||| |||||||| | |||||||||| |||||||||||||||||||||||   | ||||||| |||||| ||||||| |||||||||||||  || |    
T  20207657 taaaccgagtatcctctgtgcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctccttaagagttttaacgttgtt 20207558  T
Q  233 gcatgcccaaggctggattcgaaccca 259  Q
     |||||| ||||||| ||| |||||||    
T  20207557 acatgcctaaggctgaattagaaccca 20207531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 23933638 - 23933765
Alignment:
Q  139 gggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgc 238  Q
    |||||||||| | | |||| |||||||||||||||||| || |||||  |||| ||||||||||||  |||||||||| ||||||||  ||  |||| ||    
T  23933638 gggtatcctctgtgtgcaattgcagagactaatccctcaagtattgtcgaacctaaatgggcggcaaactctccctaaaagttttaatgctcttgcaagc 23933737  T
Q  239 ccaaggctggattcgaacccaggacctt 266  Q
     |||| ||||||||||||||||||||||    
T  23933738 tcaagactggattcgaacccaggacctt 23933765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 27484060 - 27484167
Alignment:
Q  163 gagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccagga 262  Q
    |||| ||||||||| ||||| |||| |||||||| |  || | |||||||| |||||||||||| |||||||||||||| |||||||||  ||| |||||    
T  27484060 gagattaatccctcaagcatcgtgagacccaaatcgatggaaagctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcagga 27484159  T
Q  263 ccttggtt 270  Q
    ||||||||    
T  27484160 ccttggtt 27484167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 31776580 - 31776494
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaag 217  Q
    |||||||| |||||||||||| |||||||||  ||| |||||||||||| ||||||  |||||||||||| || |||||||||||||    
T  31776580 tataaaccaggtatcctccgcccgcaactgcgaagattaatccctcgagtattgtgggacccaaatgggcagctggctctccctaag 31776494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 28665250 - 28665197
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtg 186  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  28665250 taaactgggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtg 28665197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 36821069 - 36821113
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgt 185  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  36821069 gtatcctctgcgcgcaactgcagagactaatccctcgagcattgt 36821113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 7265325 - 7265420
Alignment:
Q  164 agactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 259  Q
    |||||||||  ||||| ||||||  ||||||||| || |||  |||||||||||||||||||||  |||||||||||||| || ||| ||||||||    
T  7265325 agactaatcattcgagtattgtgggacccaaatgagcagcaaactctccctaagagttttaacatcgctgcatgcccaagactagatccgaaccca 7265420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 40099312 - 40099375
Alignment:
Q  192 caaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaa 255  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||  |||| ||||||||||||    
T  40099312 caaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaa 40099375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 29428775 - 29428857
Alignment:
Q  135 aaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaag 217  Q
    |||||||||||   || ||||||||||||||||||||||||||| |||||||  | |||||||| |||||  |||||||||||    
T  29428775 aaccgggtatcaggcgagcgcaactgcagagactaatccctcgaacattgtgggatccaaatggtcggcaaactctccctaag 29428857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 270
Target Start/End: Original strand, 24579429 - 24579570
Alignment:
Q  129 tttataaaccgggtatcctccgcgc--gcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaac 226  Q
    |||||||| ||||||||||||| |   ||||||||||||||||||| ||||||  || |   | |||||||| |||||  ||||||||||| |||||| |    
T  24579429 tttataaatcgggtatcctccgtgtatgcaactgcagagactaatctctcgagtcttctaggatccaaatggacggca--ctctccctaagtgttttatc 24579526  T
Q  227 actgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    | ||||||||||  || |||| |||||||| ||| |||||||||    
T  24579527 aatgctgcatgcgtaaagctgaattcgaactcagaaccttggtt 24579570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 2657887 - 2657951
Alignment:
Q  203 caggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttg 267  Q
    |||||||||| |||||||||||||  ||||||||||||||||||| ||| |||| |||| |||||    
T  2657887 caggctctccttaagagttttaacgttgctgcatgcccaaggctgtatttgaactcagggccttg 2657951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 32470080 - 32469986
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagc--attgtgaaacccaaatgggcggcaggctctccctaagagtttt 223  Q
    |||||||| | ||||||||||| ||||||||  | ||||||| |||||||  ||||||| |||||||||| ||||| | ||||||||| ||||||    
T  32470080 tataaaccagatatcctccgcgtgcaactgcgaacactaatctctcgagcatattgtgagacccaaatggacggcaagttctccctaaaagtttt 32469986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 45779024 - 45778889
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||| ||||||||||   ||||||||| ||||||||||||||||| ||||||| || |||| || || ||  |  ||||||| || |||||||| | |    
T  45779024 taaaccaggtatcctccattcgcaactgcggagactaatccctcgagtattgtgagactcaaacggacgacaaacaatccctaaaagctttaacaccgtt 45778925  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttgg 268  Q
    | ||| ||||| ||| ||||||||||| ||| ||||    
T  45778924 gtatgtccaagactgaattcgaacccatgacattgg 45778889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 4562778 - 4562859
Alignment:
Q  152 gcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctg 233  Q
    ||||||||||||| ||||||| ||| | |||||||| ||  |||||| ||| | | ||| ||||||||||||||||||||||    
T  4562778 gcgcaactgcagacactaatctctcaaacattgtgagacttaaatggacggtaagttcttcctaagagttttaacactgctg 4562859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 30614683 - 30614772
Alignment:
Q  153 cgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaa 242  Q
    ||||||||| ||||||||| |||| ||| || ||| ||| ||||| ||| ||  ||||| |||||||||||||| ||| |||||||||||    
T  30614683 cgcaactgccgagactaattcctcaagctttctgagacctaaatgagcgacaaactctctctaagagttttaacgctgatgcatgcccaa 30614772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 270
Target Start/End: Original strand, 4059695 - 4059810
Alignment:
Q  154 gcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcg 253  Q
    |||||| || ||||||||||||||||  |||||  ||||||||   ||| |  ||||| ||||||||||||||  || ||||||| |||||||| |||||    
T  4059695 gcaacttcatagactaatccctcgagtcttgtgtgacccaaataaacggaaaactctctctaagagttttaacgatgttgcatgctcaaggctgtattcg 4059794  T
Q  254 aacccaggaccttggtt 270  Q
    ||| || ||||||||||    
T  4059795 aactca-gaccttggtt 4059810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 40212039 - 40211979
Alignment:
Q  207 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttg 267  Q
    |||| |||||||||||||||  || |||||||||||| ||||||| ||||||| |||||||    
T  40212039 ctcttcctaagagttttaacgttgttgcatgcccaagactggatttgaacccatgaccttg 40211979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 7190415 - 7190477
Alignment:
Q  208 tctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||| ||||||||||| ||||||||||||| |||| |||| ||| ||  |||||||||    
T  7190415 tctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggtt 7190477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 3231379 - 3231287
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaa 225  Q
    |||| |||||||||||||||  ||||||  ||| |||||| ||||| |||||||  ||| ||||||  | || ||||||||||| ||||||||    
T  3231379 taaatcgggtatcctccgcgtacaactggtgagtctaatctctcgaacattgtgggacctaaatggaagacaagctctccctaaaagttttaa 3231287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 26491 - 26354
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  26491 taaaccgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 26392  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26391 gcatgcccaaggctggattcgaacccaggaccttggtt 26354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 10592087 - 10591950
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||    
T  10592087 taaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgct 10591988  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10591987 gcatgcccaaggctggattcgaacccaggaccttggtt 10591950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 5123479 - 5123598
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  5123479 taaacagggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 5123578  T
Q  233 gcatgcccaaggctggattc 252  Q
    ||||||||||||||| ||||    
T  5123579 gcatgcccaaggctgaattc 5123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 31113494 - 31113361
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||| ||||||  | |||||||||||| |||||||||||||||||||||||||||||    
T  31113494 taaatcgggtatccttcgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgct 31113395  T
Q  233 gcatgcccaaggctggattcgaacccaggacctt 266  Q
    ||||||||||||||| ||||||||| || |||||    
T  31113394 gcatgcccaaggctgaattcgaacctagaacctt 31113361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 270
Target Start/End: Original strand, 22187983 - 22188114
Alignment:
Q  137 ccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcat 236  Q
    ||||||||||||||||||||||||| |||||||||||||| || ||||||  |||||||| |||||||| ||||||  |||||||||||| ||| || ||    
T  22187983 ccgggtatcctccgcgcgcaactgcggagactaatccctctagtattgtgggacccaaataggcggcagactctcc--aagagttttaacgctgttgtat 22188080  T
Q  237 gcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||||| ||||||  |||||||||    
T  22188081 gcccaaggctggattcaaacccaataccttggtt 22188114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 30784967 - 30785093
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||| |||||||||||||||||||||| ||||||||||||| || |||||||| ||| ||||||  |||||  |||||||||||||||||||  ||||    
T  30784967 taaaccaggtatcctccgcgcgcaactgcggagactaatcccttgaacattgtgagacctaaatggatggcagattctccctaagagttttaacgttgct 30785066  T
Q  233 gcatgcccaaggctggattcgaaccca 259  Q
    ||||| |||| ||||||||||||||||    
T  30785067 gcatgtccaaagctggattcgaaccca 30785093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 267
Target Start/End: Original strand, 18909285 - 18909416
Alignment:
Q  129 tttataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacac 228  Q
    |||||||||| |||||||||| |||||||       ||||||||||||||||||||||  |  |||||| ||||||   |||||||||||||||||||||    
T  18909285 tttataaaccaggtatcctcctcgcgcaa-------gactaatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacac 18909377  T
Q  229 tgctgcatgcccaaggctggattcgaacccaggaccttg 267  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  18909378 tgctgcatacccaaggctggattcgaacctaggaccttg 18909416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 2798320 - 2798433
Alignment:
Q  157 actgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaac 256  Q
    |||||||||| ||||| || |||||||||  || |||||||||||| | ||||||||||| ||||||||| ||||||||||| ||||| |||||||||||    
T  2798320 actgcagagattaatctctagagcattgtagaaaccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaac 2798419  T
Q  257 ccaggaccttggtt 270  Q
    |||| |||||||||    
T  2798420 ccagaaccttggtt 2798433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 2804487 - 2804600
Alignment:
Q  157 actgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaac 256  Q
    |||||||||| ||||| || |||||||||  || |||||||||||| | ||||||||||| ||||||||| ||||||||||| ||||| |||||||||||    
T  2804487 actgcagagattaatctctagagcattgtagaaaccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaac 2804586  T
Q  257 ccaggaccttggtt 270  Q
    |||  |||||||||    
T  2804587 ccaaaaccttggtt 2804600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 35774740 - 35774622
Alignment:
Q  138 cgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 237  Q
    |||||||| |||||| |||||||  |||| |||| | ||||| ||||||| || |||||| |||||| |||||||||||| ||||||||| || ||||||    
T  35774740 cgggtatcttccgcgtgcaactgaggagattaattcatcgagtattgtgagactcaaatgtgcggcaagctctccctaagtgttttaacattgttgcatg 35774641  T
Q  238 cccaaggctggattcgaac 256  Q
     ||||||||  ||||||||    
T  35774640 tccaaggctaaattcgaac 35774622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 25983825 - 25983742
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaa 216  Q
    |||||||||||||||||| | |||||||| |||||||||| ||||| |||| ||  || ||||||||||||| |||||||||||    
T  25983825 taaaccgggtatcctccgtgtgcaactgcggagactaatcactcgaacattatgggactcaaatgggcggcaagctctccctaa 25983742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 29553693 - 29553606
Alignment:
Q  139 gggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaac 226  Q
    ||||||||||| ||| |||||||||||||||||| || ||||||| ||  |||||||||| || ||  ||||||||||||||||||||    
T  29553693 gggtatcctccacgcacaactgcagagactaatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaac 29553606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 36213033 - 36212962
Alignment:
Q  156 aactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaaca 227  Q
    |||||| ||||| ||||||||||||||||||  ||| ||||||||||||  |||||||||||||||||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaaca 36212962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 12336018 - 12336146
Alignment:
Q  142 tatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccca 241  Q
    |||||||| |||||||||||||| ||||||   | ||||||||||  ||| |||||  | ||| || |||  |||||||||||||||| |||||||||||    
T  12336018 tatcctccacgcgcaactgcagaaactaattttttgagcattgtgggaccaaaatgaacagcaagccctcattaagagttttaacactactgcatgccca 12336117  T
Q  242 aggctggattcgaacccaggaccttggtt 270  Q
    | | || |||| || ||||||||||||||    
T  12336118 atgttgaattcaaatccaggaccttggtt 12336146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 28023494 - 28023561
Alignment:
Q  203 caggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||| |||||||||||| ||  ||||| |||||||||||||||| |||||| ||||||    
T  28023494 caggctctccctaaaagttttaacactactatatgcctaaggctggattcgaactcaggacattggtt 28023561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 10795308 - 10795436
Alignment:
Q  142 tatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccca 241  Q
    |||||||| ||||||||| |  | ||||||||||| |   |||||  ||||||||||||||||   ||||| | ||||||||||  ||||| |||||| |    
T  10795308 tatcctccacgcgcaactacgaacactaatccctcaaattttgtgggacccaaatgggcggcacattctcctttagagttttaatgctgcttcatgccta 10795407  T
Q  242 aggctggattcgaacccaggaccttggtt 270  Q
    |||||||||| ||||  ||||||||||||    
T  10795408 aggctggatttgaacttaggaccttggtt 10795436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 12682787 - 12682672
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccc 240  Q
    |||||||||||||||||||||  |||||||| ||||||  || |||  |  ||| ||  || || | |||||| ||||||||||||  || ||||||| |    
T  12682787 gtatcctccgcgcgcaactgcgaagactaattcctcgaatatggtgggattcaattgaacgacaagttctcccgaagagttttaacgttgttgcatgctc 12682688  T
Q  241 aaggctggattcgaac 256  Q
    ||||||||||||||||    
T  12682687 aaggctggattcgaac 12682672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 18244723 - 18244640
Alignment:
Q  154 gcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 237  Q
    |||||||| |||||||||| ||| || |||||| |||||||||||| || |   |||||| |||||||||||  ||||||||||    
T  18244723 gcaactgcggagactaatctctcaagtattgtggaacccaaatgggtggaaaaatctcccaaagagttttaatgctgctgcatg 18244640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 32313105 - 32313180
Alignment:
Q  151 cgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaac 226  Q
    |||||||||| |||||||||||||||||| |||||   ||  |||||||| |||  |||||| |||||||||||||    
T  32313105 cgcgcaactgtagagactaatccctcgagtattgtaggacttaaatgggcagcaaactctccttaagagttttaac 32313180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 2744093 - 2743956
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||| || || |||||||||||||||||||||||||||    
T  2744093 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgct 2743994  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2743993 gcatgcccaaggctggattcgaacccaggaccttggtt 2743956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 4125005 - 4125142
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  4125005 taaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgct 4125104  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  4125105 gcatgcccaaggcttgattcgaacccaggacattggtt 4125142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 19715706 - 19715844
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccc-tcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgc 231  Q
    |||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||  |||||||||||||||| ||||||||| ||||||||||| ||||    
T  19715706 taaaccaggtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgctgc 19715805  T
Q  232 tgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19715806 tgcatgcccaaggctggattcgaacccaggaccttggtt 19715844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 13468726 - 13468863
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||||||||||  || |||||||||||||| ||||| |||||||||||||| |||||    
T  13468726 taaaccgggtatcctccgtgcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgct 13468825  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
     |||||||||||||||||||||||||||||||||||||    
T  13468826 acatgcccaaggctggattcgaacccaggaccttggtt 13468863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 30936166 - 30936027
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    ||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||  ||    
T  30936166 tataaaccgggtaacatccgcgcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttg 30936067  T
Q  231 ctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||  |||||||||||||||| |||||||||||||    
T  30936066 ctgcatgcttaaggctggattcgaactcaggaccttggtt 30936027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 144 - 270
Target Start/End: Original strand, 12958077 - 12958203
Alignment:
Q  144 tcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaag 243  Q
    |||||||||||| ||||| ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| |||||||||||||||     
T  12958077 tcctccgcgcgctactgcggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaat 12958176  T
Q  244 gctggattcgaacccaggaccttggtt 270  Q
    ||||||||| |||||| ||||||||||    
T  12958177 gctggattcaaacccatgaccttggtt 12958203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 7839232 - 7839343
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||  |||    
T  7839232 tataacccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaaagctg 7839331  T
Q  231 ctgcatgcccaa 242  Q
    ||||||||||||    
T  7839332 ctgcatgcccaa 7839343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 160 - 267
Target Start/End: Complemental strand, 15683062 - 15682955
Alignment:
Q  160 gcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 259  Q
    ||||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  15683062 gcagagattaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactca 15682963  T
Q  260 ggaccttg 267  Q
    ||||||||    
T  15682962 ggaccttg 15682955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 30055991 - 30056115
Alignment:
Q  142 tatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccca 241  Q
    ||||| |||| |||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||||||| |    
T  30055991 tatcccccgcacgcaactaaagagactaatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgccta 30056090  T
Q  242 aggctggattcgaacccaggacctt 266  Q
    |||||||||| ||||||| ||||||    
T  30056091 aggctggatttgaacccatgacctt 30056115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 154 - 270
Target Start/End: Original strand, 36994502 - 36994618
Alignment:
Q  154 gcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcg 253  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||| |||  |||||| ||||||||||||| |||||||||| |||||||||||||||    
T  36994502 gcaactgcagagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcg 36994601  T
Q  254 aacccaggaccttggtt 270  Q
    |||||||||||||||||    
T  36994602 aacccaggaccttggtt 36994618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 24988659 - 24988530
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggct-----ctccctaagagttttaaca 227  Q
    ||||| ||||||||||   |||||| ||| ||||||||||||||||| ||||||  || |||||| |||||| |||     ||||| |||||||||| ||    
T  24988659 taaactgggtatcctcaatgcgcaattgcggagactaatccctcgagtattgtgggactcaaatgagcggcaagctatcccctccccaagagttttagca 24988560  T
Q  228 ctgctgcatgcccaaggctggattcgaacc 257  Q
    ||||||||||||||||||||||||| ||||    
T  24988559 ctgctgcatgcccaaggctggattcaaacc 24988530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 39086912 - 39086859
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtg 186  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  39086912 taaaccaggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtg 39086859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 267
Target Start/End: Complemental strand, 44639147 - 44639009
Alignment:
Q  129 tttataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacac 228  Q
    ||||||||||||||||| |||||  |||| || | ||||||||| | | || ||||||   | |||||| ||||||  ||||||||||||||||||||      
T  44639147 tttataaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagtattgtggggctcaaatgtgcggcaaactctccctaagagttttaacgt 44639048  T
Q  229 tgctgcatgcccaaggctggattcgaacccaggaccttg 267  Q
    || ||||||| ||||| ||||||| ||  ||||||||||    
T  44639047 tgttgcatgctcaaggttggattcaaattcaggaccttg 44639009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 35207114 - 35207023
Alignment:
Q  179 gcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||  |||||||||| || || ||| ||| ||||||||||||| |||||||||| |||||| |  |||||||||||| | |||||||    
T  35207114 gcattgtgggacccaaatggacgacatgctttccttaagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggtt 35207023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 21032425 - 21032333
Alignment:
Q  164 agactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacc 257  Q
    ||||||||||||||||||||||   || |||||  ||||||  |||||||||| ||||| ||| || ||||||||| ||||||||||| |||||    
T  21032425 agactaatccctcgagcattgtagtactcaaataagcggcaaactctccctaatagtttaaacgct-ctgcatgccaaaggctggatttgaacc 21032333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 8521857 - 8521778
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccc 213  Q
    |||| |||||||| ||||||||||||||  || |||||||||||||||||||||  || |||||||||  ||| |||||||    
T  8521857 taaatcgggtatcttccgcgcgcaactgg-gatactaatccctcgagcattgtgggactcaaatgggcatcagactctccc 8521778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 27121804 - 27121868
Alignment:
Q  206 gctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||| ||||| ||||||||||||| |||||||  || ||||||||||||||||| || ||||||    
T  27121804 gctcttcctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggtt 27121868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 16701434 - 16701493
Alignment:
Q  207 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggacctt 266  Q
    ||||||||||||| |||||  || ||| ||| |||||||||||||||||||||| |||||    
T  16701434 ctctccctaagaggtttaaagctactgtatgtccaaggctggattcgaacccagaacctt 16701493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 29285017 - 29284966
Alignment:
Q  181 attgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||| ||||||||||| | ||| ||||||| |||||||||||||||||||    
T  29285017 attgtggaacccaaatggactgcaagctctccataagagttttaacactgct 29284966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 32422809 - 32422891
Alignment:
Q  189 acccaaatgggcggcaggctctccctaagagttttaacactgctgca-tgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||   |||||| || |||||||||||||||||| ||||||||  || ||||||  |||||| |||||||    
T  32422809 acccaaatgggcggcaatttctcccaaaaagttttaacactgctgcattgcccaagattgaattcgattccaggatcttggtt 32422891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 10031058 - 10031025
Alignment:
Q  193 aaatgggcggcaggctctccctaagagttttaac 226  Q
    |||||||||||| |||||||||||||||||||||    
T  10031058 aaatgggcggcaagctctccctaagagttttaac 10031025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 8878150 - 8878210
Alignment:
Q  207 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttg 267  Q
    |||| |||||||||||||||  || |||||||| || |||||||||||||||  |||||||    
T  8878150 ctcttcctaagagttttaacgttgttgcatgcctaaagctggattcgaacccgagaccttg 8878210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 42745097 - 42745234
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| ||| |||| ||||||||||||||||||||| ||||    
T  42745097 taaaccgggtatcctccgcgcgcaactgctgagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacattgct 42745196  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  42745197 gcatgcccaaggctggattcgaacccaagaccttggtt 42745234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 5394548 - 5394420
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccc 240  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5394548 gtatcctccgcgtgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaaca-tgctgcatgccc 5394450  T
Q  241 aaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||||||||    
T  5394449 aaggctggattcgaacccaggaccttggtt 5394420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 129 - 270
Target Start/End: Original strand, 18105340 - 18105480
Alignment:
Q  129 tttataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacac 228  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||||||||| ||||| |||||||      
T  18105340 tttataaaccggatatcctccgcgcgcaactgc-gagactaatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgt 18105438  T
Q  229 tgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  18105439 tgttgcatgcccaaggctggattcgaacccaggaccttggtt 18105480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 31579210 - 31579344
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||  ||  ||||||||||||| |||||||||| ||||||||||||| |    
T  31579210 taaaccgggtatcctccgcgcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgtt 31579309  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttg 267  Q
    ||||||||||||||||||||||||||| |||||||    
T  31579310 gcatgcccaaggctggattcgaacccaagaccttg 31579344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 9438126 - 9438254
Alignment:
Q  142 tatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccca 241  Q
    |||||||||||||||||||  || ||||||||||| |||||||||  || ||||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  9438126 tatcctccgcgcgcaactgtggaaactaatccctcaagcattgtgggacacaaatgggcggcaggttcttcctaagagttttaaccctgctgcatgccca 9438225  T
Q  242 aggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||||| | ||| ||||||    
T  9438226 aggctggattcgaaccaaagactttggtt 9438254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 44732616 - 44732691
Alignment:
Q  195 atgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44732616 atgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 44732691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 131 - 251
Target Start/End: Complemental strand, 17981659 - 17981540
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||  ||||||||  |||||| ||||||||||||||||||||   ||    
T  17981659 tataaaccgggtatcctccgcgcgcaactgcggagactaatctctcgagcattgtgggacccaaat-tgcggcaagctctccctaagagttttaatgttg 17981561  T
Q  231 ctgcatgcccaaggctggatt 251  Q
     |||||||||||| |||||||    
T  17981560 ttgcatgcccaagactggatt 17981540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 25423908 - 25423821
Alignment:
Q  129 tttataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaa 216  Q
    |||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  25423908 tttataaatcgggtatcctccacgcgcaactgctgagactaatccctcgagcattgtgggacccaaatgggcggcaggttctccctaa 25423821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 261
Target Start/End: Original strand, 38372980 - 38373101
Alignment:
Q  138 cgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 237  Q
    ||||||||||||||||||||||| | |||||||| ||| ||||||||||  |||||  ||||||||| ||||| ||||||||||||| | ||||||||||    
T  38372980 cgggtatcctccgcgcgcaactgtatagactaattccttgagcattgtgggaccca--tgggcggcaagctcttcctaagagttttaccgctgctgcatg 38373077  T
Q  238 cccaaggctggattcgaacccagg 261  Q
    |  |||| ||||||||||||||||    
T  38373078 cataaggttggattcgaacccagg 38373101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 993906 - 993777
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcc 239  Q
    |||||||||| |||||||| || || |||||||| |  || |||||   |||||||||||||||| | ||||||||||||||||| | ||||||||||||    
T  993906 ggtatcctccacgcgcaacggcggaaactaatccattcagtattgtaggacccaaatgggcggcaagttctccctaagagtttta-cgctgctgcatgcc 993808  T
Q  240 caaggctggattcgaacccaggaccttggtt 270  Q
    ||||| || ||||||||||||||||||||||    
T  993807 caaggttgaattcgaacccaggaccttggtt 993777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 12133267 - 12133345
Alignment:
Q  189 acccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttg 267  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||| |||||||    
T  12133267 acccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttg 12133345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 7157601 - 7157521
Alignment:
Q  190 cccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||| |||| |||||||    
T  7157601 cccaaataggcggcaggctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggtt 7157521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 37568785 - 37568845
Alignment:
Q  210 tccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggtt 37568845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 264
Target Start/End: Original strand, 37179982 - 37180108
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| |||||||||||||||||||| |||  |||||||||||||||| ||||||  || |||||||||||||  |||||||||||||     |||||| |    
T  37179982 taaatcgggtatcctccgcgcgcaagtgcgtagactaatccctcgagtattgtgggactcaaatgggcggcacactctccctaagag-----acactgtt 37180076  T
Q  233 gcatgcccaaggctggattcgaacccaggacc 264  Q
    ||||| ||||| ||||||||||||||| ||||    
T  37180077 gcatgtccaagactggattcgaacccaagacc 37180108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 264
Target Start/End: Complemental strand, 38743879 - 38743767
Alignment:
Q  152 gcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 251  Q
    |||||||||| |||||||||||||  |||||||||| | ||||||| |||||| |||||||| || |||||||||  ||||||||||||||| || ||||    
T  38743879 gcgcaactgcggagactaatccctaaagcattgtgagatccaaatgagcggcaagctctccccaaaagttttaacgttgctgcatgcccaagactagatt 38743780  T
Q  252 cgaacccaggacc 264  Q
    | ||| |||||||    
T  38743779 caaactcaggacc 38743767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 7020352 - 7020446
Alignment:
Q  144 tcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcc 239  Q
    |||||||||||||||||  |||||||||| ||||||||||||   |||||||||||||||| | ||||||||||| |||||||| |||||||||||    
T  7020352 tcctccgcgcgcaactgtcgagactaatcactcgagcattgtaggacccaaatgggcggcaagttctccctaaga-ttttaacattgctgcatgcc 7020446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 44752205 - 44752304
Alignment:
Q  163 gagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccagga 262  Q
    ||||||||||||||||| |||||  ||||||||| || |||| |||||||| ||||||||||||  || |||||||||||| || |||||||||| ||||    
T  44752205 gagactaatccctcgagtattgtagaacccaaattggtggcaagctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaacctagga 44752304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 270
Target Start/End: Original strand, 14121882 - 14122000
Alignment:
Q  152 gcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 251  Q
    |||||||| || |||||||||||||||||||||||  || ||||||||||||| | |||| |||||| |||||||  |||||||||  |||| ||| |||    
T  14121882 gcgcaacttcatagactaatccctcgagcattgtgggactcaaatgggcggcaagttctctctaagaattttaacgttgctgcatgttcaagactgaatt 14121981  T
Q  252 cgaacccaggaccttggtt 270  Q
    | ||| ||||||| |||||    
T  14121982 caaactcaggaccctggtt 14122000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 37092176 - 37092247
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggca 204  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||| ||||  |||||||||| |||||    
T  37092176 taaaccgggtatcctccgtgcacaactgcggagactaatccctcgagcactgtgggacccaaatggacggca 37092247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 12233064 - 12233146
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagtttt 223  Q
    |||||||||  ||| |||||  ||||||||||||||||||||||||||||  ||||||||||||  ||||| |||||||||||    
T  12233064 gtatcctccaagcgtaactgtggagactaatccctcgagcattgtgaaacttaaatgggcggcaaactctctctaagagtttt 12233146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 17627660 - 17627582
Alignment:
Q  192 caaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||| |||  || ||||||||| |||||||  || ||||||||||||||||||||||||| |||||||||||||    
T  17627660 caaatgggcagcaaactttccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggtt 17627582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 17672732 - 17672654
Alignment:
Q  192 caaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||| |||  |||||||||||| |||||||  || ||||||||||||| ||||||||||| |||||||||||||    
T  17672732 caaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggttggattcgaactcaggaccttggtt 17672654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 14551636 - 14551557
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctct 210  Q
    |||||| || |||||||| |||||||||||| |||| ||||||||||||||||||   |||||||| |||||||| ||||    
T  14551636 tataaatcgagtatcctctgcgcgcaactgcggagattaatccctcgagcattgtaggacccaaataggcggcagactct 14551557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 255
Target Start/End: Complemental strand, 38464108 - 38463993
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcc 239  Q
    |||||||||| ||||||| |||| ||||||||| |||||| ||||||  || ||||| | |||   |||| | | ||||||||||||  || ||||||||    
T  38464108 ggtatcctccacgcgcaattgcaaagactaatcactcgagtattgtgggactcaaatagacggttagctccctccaagagttttaacggtgttgcatgcc 38464009  T
Q  240 caaggctggattcgaa 255  Q
    ||||||||||||||||    
T  38464008 caaggctggattcgaa 38463993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 39401070 - 39401187
Alignment:
Q  153 cgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattc 252  Q
    ||||||||| ||| |||||| | |||||||||||  ||| |||||| || |  ||||||||||| ||||||||   | ||||||||||||||||| ||||    
T  39401070 cgcaactgcggagtctaatctcacgagcattgtgggacctaaatggacgacgagctctccctaaaagttttaatgatactgcatgcccaaggctgaattc 39401169  T
Q  253 gaacccaggaccttggtt 270  Q
    ||| ||| || |||||||    
T  39401170 gaatccaagatcttggtt 39401187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 17658563 - 17658485
Alignment:
Q  192 caaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||| |||  |||||||||||| |||||||  || ||||||||||||||| ||||||||  ||||| |||||||    
T  17658563 caaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggctagattcgaattcaggatcttggtt 17658485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 14412874 - 14412789
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaa 225  Q
    |||||||| ||||| ||||||||||||||||| ||| ||||||| ||  || || ||||||  || ||||||||||| ||||||||    
T  14412874 ggtatccttcgcgcacaactgcagagactaattccttgagcattatgggacacagatgggcaacaagctctccctaaaagttttaa 14412789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 35476317 - 35476224
Alignment:
Q  149 cgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaa 242  Q
    |||||||||| | ||| ||| |||| |||||  |||||| |||||||||| || ||  ||||||| ||||||||||||| || |||||||||||    
T  35476317 cgcgcgcaacagtagaaactgatccttcgagttttgtgagacccaaatggacgacaaactctcccgaagagttttaacaatgttgcatgcccaa 35476224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 17655801 - 17655750
Alignment:
Q  153 cgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggca 204  Q
    ||||||||| |||||||||||||||||| ||||| || ||||||||| ||||    
T  17655801 cgcaactgcggagactaatccctcgagccttgtggaatccaaatgggtggca 17655750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 28366014 - 28365972
Alignment:
Q  228 ctgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||||||||| |||||||| || ||||||||||    
T  28366014 ctgctgcatgcccaaggctgcattcgaactcacgaccttggtt 28365972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 34386630 - 34386552
Alignment:
Q  146 ctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagtttta 224  Q
    ||||||||| ||||||||||| ||||| |||||||||| ||| | |||||| | ||||| ||||||  | |||||||||    
T  34386630 ctccgcgcgtaactgcagagattaatctctcgagcattatgagatccaaatagacggcaagctctctatgagagtttta 34386552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 39314547 - 39314497
Alignment:
Q  192 caaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaa 242  Q
    |||||||||||||  ||||||||| |||||||||| | |||||||||||||    
T  39314547 caaatgggcggcaaactctccctacgagttttaacgcagctgcatgcccaa 39314497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 13835444 - 13835521
Alignment:
Q  139 gggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaa 216  Q
    ||||||||||| | | |||||||||| ||||||||||| | |||||||  || ||||||  ||||| |||||||||||    
T  13835444 gggtatcctccacacacaactgcagaaactaatccctcaaacattgtgggactcaaatgaacggcaagctctccctaa 13835521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 13986992 - 13987041
Alignment:
Q  207 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaac 256  Q
    |||||||||| |||||| ||||| |||||||| ||||| |||||||||||    
T  13986992 ctctccctaaaagtttttacactactgcatgctcaaggttggattcgaac 13987041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 13992890 - 13992939
Alignment:
Q  207 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaac 256  Q
    |||||||||| |||||| ||||| |||||||| ||||| |||||||||||    
T  13992890 ctctccctaaaagtttttacactactgcatgctcaaggttggattcgaac 13992939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 44814996 - 44814951
Alignment:
Q  135 aaccgggtatcctccgcgcgcaactgcagagactaatccctcgagc 180  Q
    |||||||| ||||| || ||||||||||||||||||||||| ||||    
T  44814996 aaccgggtgtcctctgctcgcaactgcagagactaatcccttgagc 44814951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 1682176 - 1682136
Alignment:
Q  139 gggtatcctccgcgcgcaactgcagagactaatccctcgag 179  Q
    |||||||||| | |||||||||| |||||||||||||||||    
T  1682176 gggtatcctctgtgcgcaactgcggagactaatccctcgag 1682136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 33757102 - 33757014
Alignment:
Q  168 taatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaac 256  Q
    ||||||||| |||||||||  |  |||||| ||| || ||||| ||||||||||||||| ||  || |||| |||||||| ||||||||    
T  33757102 taatccctcaagcattgtgcgattcaaatgagcgacaagctcttcctaagagttttaacgctattgtatgctcaaggctgaattcgaac 33757014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 27763881 - 27763744
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||||||||  || ||||||| |||||| |||||||||||||||||||||||| |    
T  27763881 taaaccggatatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgtt 27763782  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    | ||||||||||||||||||||||||||||||||||||    
T  27763781 gtatgcccaaggctggattcgaacccaggaccttggtt 27763744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 20861410 - 20861289
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||    
T  20861410 tataaactgggtatcctccgcgcacaactgcggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaacgctg 20861311  T
Q  231 ctgcatgcccaaggctggattc 252  Q
    |||||||||||| |||||||||    
T  20861310 ctgcatgcccaatgctggattc 20861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 30995946 - 30996083
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||| ||| |    
T  30995946 taaaccagatatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgtt 30996045  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  30996046 gcatgcccaaggtcggattcgaacccaggaccttggtt 30996083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 48204292 - 48204429
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| |||||||||||||||||||||||| || |||||||||| |||||||||| ||||||||||| || || |||||||||||| ||||||||  ||||    
T  48204292 taaatcgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgct 48204391  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  48204392 gcatgcccaaggctggattcgaacccaagaccttggtt 48204429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 25224859 - 25224722
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||||||||||||||||| |||||||| ||||||||||||| ||||||||||  ||| |||||||||||| | ||||| ||||||||||||| |||||    
T  25224859 taaaccgggtatcctccgcgtgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaacgctgct 25224760  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||| |||||  || |||||||||||||||||||||||    
T  25224759 gcattcccaaaacttgattcgaacccaggaccttggtt 25224722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 55123259 - 55123134
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    |||||| | ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||  ||| ||||||||||||| ||||||| |||    
T  55123259 tataaatcaggtatcctccgcgcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctg 55123160  T
Q  231 ctgcatgcccaaggctggattcgaac 256  Q
    ||||||  ||||||||||||||||||    
T  55123159 ctgcatttccaaggctggattcgaac 55123134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 38331288 - 38331151
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| ||||||||||||||| |||||||| |||||||||||||| | |||||||  |||||||||||||||| |||||| |||||||||||||| |||||    
T  38331288 taaatcgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctgct 38331189  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||| ||| | ||||||| ||| |||||| ||||||    
T  38331188 gcatgctcaaagttggattcaaactcaggacattggtt 38331151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 22288395 - 22288258
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||| ||| ||||||| || || | |||||||||||||||||||| || |    
T  22288395 taaaccgggtatcctccgcgcacaactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgtt 22288296  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||  |||||||| |||||||| |||||| ||||||    
T  22288295 gcatgttcaaggctgaattcgaactcaggactttggtt 22288258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 133 - 255
Target Start/End: Complemental strand, 1642766 - 1642644
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| ||| |||||||||||||||||||| || ||||||||||| || ||||||  |||||||||| ||| || |||||||||| ||||||||||| |||    
T  1642766 taaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacggct 1642667  T
Q  233 gcatgcccaaggctggattcgaa 255  Q
    |||||  ||||||| ||||||||    
T  1642666 gcatgttcaaggctagattcgaa 1642644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 133 - 267
Target Start/End: Complemental strand, 40294772 - 40294638
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| ||||||||||  | |||||||||| ||||||||||| ||||| ||||||  |  |||||| |||||| ||| |||||||||||||||||| || |    
T  40294772 taaatcgggtatcctttgtgcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgtt 40294673  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttg 267  Q
    ||||  |||||||||||||||||| ||||||||||    
T  40294672 gcatatccaaggctggattcgaactcaggaccttg 40294638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 8757504 - 8757431
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcagg 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||||||    
T  8757504 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaataggcggcagg 8757431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 43621297 - 43621420
Alignment:
Q  138 cgggtatcctccgcgcgcaactgcagagactaatccctcgagca-ttgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcat 236  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||  ||||||| |||| ||||||||||| |||||||||  ||||||||    
T  43621297 cgggtatcctctgcgcgcaactacagagactaatccctcgagcatttgtgagacttaaatgggaggcaagctctccctaaaagttttaacgttgctgcat 43621396  T
Q  237 gccc-aaggctggattcgaaccca 259  Q
     ||| |||  ||||||||||||||    
T  43621397 acccaaagtttggattcgaaccca 43621420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 48210946 - 48211065
Alignment:
Q  138 cgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 237  Q
    |||||||| |||||| |||||||| ||||  ||| ||||||| ||||||  ||| |||| | ||||| ||||||| |||||||||||||  |||||||||    
T  48210946 cgggtatcttccgcgtgcaactgcggagatcaattcctcgagtattgtgggacctaaatagacggcaagctctccataagagttttaacgttgctgcatg 48211045  T
Q  238 cccaaggctggattcgaacc 257  Q
    | ||||||||||||||||||    
T  48211046 ctcaaggctggattcgaacc 48211065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 15283200 - 15283106
Alignment:
Q  164 agactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 259  Q
    ||||||||| |||||||||||||  ||||||||||||||||  || ||| |||||||||||| | ||||||||||||| | |||||||||||||||    
T  15283200 agactaatctctcgagcattgtgggacccaaatgggcggcaatctttccataagagttttaaga-tgctgcatgcccatgactggattcgaaccca 15283106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 39950366 - 39950235
Alignment:
Q  139 gggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgc 238  Q
    |||||||||||||  |||||||| ||||||||||| |||||||||||   | |||||||  || |||  ||||||||| | ||||||| ||||||||||     
T  39950366 gggtatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctgcatgt 39950267  T
Q  239 ccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||  |||||||| |||||| ||||||||||    
T  39950266 ccaaaactggattctaacccaagaccttggtt 39950235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 38088740 - 38088658
Alignment:
Q  188 aacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||| ||||||| | ||||||||||||||||||| || |||||||||||| ||||||||||||||  | |||||||||    
T  38088740 aacccaaataggcggcaagttctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggtt 38088658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 15446126 - 15446028
Alignment:
Q  163 gagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgc----atgcccaaggctggattcgaacc 257  Q
    ||||||||||| ||||||||||||| |||||||||| |||||  |||||| || || | |||||||||||||    |||||||||||||||||||||||    
T  15446126 gagactaatccgtcgagcattgtgagacccaaatggacggcaaactctccatacgaatattaacactgctgcacgaatgcccaaggctggattcgaacc 15446028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 11767270 - 11767138
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| |||||||||||| |||| || |||  |||||||||| || |  ||||||  || ||||||||||||| || ||  ||||||||||||| | || |    
T  11767270 taaatcgggtatcctccacgcgtaattgcgaagactaatccttcaaatattgtgggactcaaatgggcggcaagcacttgctaagagttttaatattgtt 11767171  T
Q  233 gcatgcccaaggctggattcgaacccaggacct 265  Q
    |||||||||||| | ||||||||||||||||||    
T  11767170 gcatgcccaaggatagattcgaacccaggacct 11767138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 14352694 - 14352590
Alignment:
Q  156 aactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgc----ccaaggctggatt 251  Q
    |||||| ||||||||||||||||| |||| | | || |||||| || || ||||||| |||||||||||||||||||||||||    |||||||||||||    
T  14352694 aactgcggagactaatccctcgagtattgggtatcc-aaatggacgacaagctctccgtaagagttttaacactgctgcatgcatgtccaaggctggatt 14352596  T
Q  252 cgaacc 257  Q
    ||||||    
T  14352595 cgaacc 14352590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 22288681 - 22288557
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||||||||||||||||| |||||||||||||||||   ||||| |||| | ||| ||||||  || || | |||| |||||||||||| ||||| |    
T  22288681 taaaccgggtatcctccgcgcacaactgcagagactaatttgtcgagtattgagtaactcaaatgtacgacaagttctcactaagagttttagcactgtt 22288582  T
Q  233 gcatgcccaaggctggattcgaacc 257  Q
    |||||  ||| |||| |||||||||    
T  22288581 gcatgttcaaagctgaattcgaacc 22288557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 257
Target Start/End: Complemental strand, 46725576 - 46725461
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccc 240  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||||  ||||| |||| | |||  || |||||||||||||||||  || || ||||||    
T  46725576 gtatcctccgcgcgtaactgaagagactaatccctcaagcattgtg-gacccagatggacagcaaactatccctaagagttttaacgttgttgaatgccc 46725478  T
Q  241 aaggctggattcgaacc 257  Q
    ||||||| |||| ||||    
T  46725477 aaggctgcattcaaacc 46725461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 40318430 - 40318482
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgt 185  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| ||||||    
T  40318430 taaaacgggtatcctccgcgcgcaactgcggagactaatccctcgaacattgt 40318482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 22755725 - 22755667
Alignment:
Q  212 cctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| || || ||||||    
T  22755725 cctaagagttttaatgctgctgcatgcccaaggctggattcgaacctagtactttggtt 22755667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 25739248 - 25739155
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaact-gcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaa 225  Q
    ||||||||||||||||||| ||||||| || |||||||||   |||||  || ||  |||||||||||||| |  |||||||||||||||||||    
T  25739248 taaaccgggtatcctccgcacgcaacttgcggagactaatttatcgagtcttatgggacccaaatgggcggaaaactctccctaagagttttaa 25739155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 44941244 - 44941316
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggca 204  Q
    ||||||| || |||||||||||||||||||| ||||||||| ||||||||||  ||  | ||||||||||||||    
T  44941244 tataaactggatatcctccgcgcgcaactgcggagactaat-cctcgagcataatgggatccaaatgggcggca 44941316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 23189515 - 23189617
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccc 240  Q
    ||||||| ||||| |||||  ||||||||||| ||||| | |||||| || |||||| ||||||  ||| |||||| ||||| ||| ||||| ||||| |    
T  23189515 gtatccttcgcgcacaactatagagactaatctctcgaaccttgtgagactcaaatgagcggcaaactcaccctaaaagtttaaactctgctacatgctc 23189614  T
Q  241 aag 243  Q
    |||    
T  23189615 aag 23189617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 42514698 - 42514638
Alignment:
Q  201 ggcaggctctccctaagagttttaa--cactgctgcatgcccaaggctggattcgaaccca 259  Q
    |||| ||||||||||||||||||||  | ||| ||||||||||| | ||||||||||||||    
T  42514698 ggcaagctctccctaagagttttaacgcgctgatgcatgcccaaagttggattcgaaccca 42514638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 12836876 - 12837005
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| |||||||||  |||||||||||||||  ||||||||||||||||||||| |||    
T  12836876 tataaaccgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctg 12836975  T
Q  231 ctgcatgcccaaggctggattcgaacccag 260  Q
    ||||||||| ||||||||||||||||||||    
T  12836976 ctgcatgcctaaggctggattcgaacccag 12837005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 12411310 - 12411171
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    |||||||||||||||| |||||||||||||  |||||||||||||| |||||||||  ||  ||||||||||||| |||| ||||||||||||||| |||    
T  12411310 tataaaccgggtatcccccgcgcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctg 12411211  T
Q  231 ctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  12411210 ctgcatgcccaaggctggattcgaactcaggaccttggtt 12411171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 131 - 266
Target Start/End: Complemental strand, 28099405 - 28099270
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg 230  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| || ||| ||||||| || ||   ||||||||| |||||||||||||    
T  28099405 tataaactgggtatcctccgctcgcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactg 28099306  T
Q  231 ctgcatgcccaaggctggattcgaacccaggacctt 266  Q
    ||||||||||||||||||||||||||||||||||||    
T  28099305 ctgcatgcccaaggctggattcgaacccaggacctt 28099270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 21910364 - 21910228
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||| ||||||||||||| |||||||| ||||||||||||| ||| ||||||  ||| ||||| ||||||| ||||| ||||||||||||||  || |    
T  21910364 taaaccaggtatcctccgcgtgcaactgcggagactaatccct-gagtattgtgggacctaaatgagcggcagactctctctaagagttttaacgatgtt 21910266  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||||||||||||||||||| |||||||    
T  21910265 gcatgcccaaggctggattcgaacccaggatcttggtt 21910228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 133 - 254
Target Start/End: Complemental strand, 31412282 - 31412161
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| ||| ||||||||| |||||||||  |||||||||  ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  31412282 taaatcggatatcctccgtgcgcaactgtggagactaatttctcgagcattgtggaacccaaatgggcggcagactctccctaagagttttaacactgct 31412183  T
Q  233 gcatgcccaaggctggattcga 254  Q
    ||| |||||| |||| ||||||    
T  31412182 gcacgcccaaagctgaattcga 31412161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 423782 - 423678
Alignment:
Q  166 actaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggacct 265  Q
    |||||||||||||||||||||  || ||||||| ||||||  | || |||||||||||||| |||| |||||||||||||||||||| ||||||  ||||    
T  423782 actaatccctcgagcattgtgggactcaaatggacggcagtttatctctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaacct 423683  T
Q  266 tggtt 270  Q
    |||||    
T  423682 tggtt 423678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 21028982 - 21029101
Alignment:
Q  155 caactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactg------ctgcatgcccaaggctgg 248  Q
    ||||||| ||||||||||||| |||| |||||  ||||||||||||||||  ||||  |||||||||||||| |||      ||||||||||||||||||    
T  21028982 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactct--ctaagagttttaacgctgctgcatctgcatgcccaaggctgg 21029079  T
Q  249 attcgaacccaggaccttggtt 270  Q
    ||||||||||| ||||||||||    
T  21029080 attcgaacccaagaccttggtt 21029101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 25084171 - 25084071
Alignment:
Q  156 aactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaa 255  Q
    ||||||| ||||||||| ||||||||||||| |||  ||||||  | || |||||||||||||||||||||| ||||||||| ||||| ||| |||||||    
T  25084171 aactgcatagactaatctctcgagcattgtggaacttaaatggatgacaagctctccctaagagttttaacattgctgcatgtccaagactgaattcgaa 25084072  T
Q  256 c 256  Q
    |    
T  25084071 c 25084071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 31107475 - 31107607
Alignment:
Q  134 aaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctg 233  Q
    ||||| ||||||||| |||||||| | |||||||||||| |||||  ||||||  |  ||||||| ||| | |||||||| |||||||||||| ||| ||    
T  31107475 aaaccaggtatcctctgcgcgcaattacagagactaatctctcgaatattgtgggaatcaaatggacggtaagctctcccaaagagttttaacgctgttg 31107574  T
Q  234 catgcccaaggctggattcgaacccaggacctt 266  Q
    |||| |||| ||||||||||||| ||| |||||    
T  31107575 catgtccaatgctggattcgaactcagaacctt 31107607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 10604492 - 10604568
Alignment:
Q  62 ctagggttgctgtatacatgggaaacggattgtctcct----gtgtgatttaattatttcaagttttcttctttata 134  Q
    |||||||||||||||| |||||||||||||||| |||     |||||||||||||||||||||||||||||||||||    
T  10604492 ctagggttgctgtatatatgggaaacggattgtatccatctcgtgtgatttaattatttcaagttttcttctttata 10604568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 9536918 - 9536844
Alignment:
Q  142 tatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaa 216  Q
    ||||||||| |||||||||| |||||||||||||||||||||||| || | |||||| ||| |||||||||||||    
T  9536918 tatcctccgagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccctaa 9536844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 1534394 - 1534320
Alignment:
Q  151 cgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaa 225  Q
    ||||||||||| ||||  ||| ||||||||||||||  || |||||||||| || ||||||||||||||||||||    
T  1534394 cgcgcaactgcggagatcaattcctcgagcattgtgcgactcaaatgggcgacaagctctccctaagagttttaa 1534320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 21028845 - 21028924
Alignment:
Q  155 caactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcat 236  Q
    ||||||| ||||||||||||| |||| |||||  ||||||||||||||||  ||||  |||||||||||||| |||||||||    
T  21028845 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactct--ctaagagttttaacgctgctgcat 21028924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 28933277 - 28933179
Alignment:
Q  154 gcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattc 252  Q
    |||||||| || |||| || ||||||||||||| |||||||||||||||||  ||||| |||||| |||||||  || |||||| | ||||||| ||||    
T  28933277 gcaactgcggatactattcactcgagcattgtggaacccaaatgggcggcaaactctctctaagaattttaacgatgttgcatgtctaaggctgaattc 28933179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 3238058 - 3237943
Alignment:
Q  154 gcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcg 253  Q
    |||||||  ||||||||||||||||  |||||| |||  |||||  ||||| | || ||||||||||||||||| | ||| |||  ||||||||||||||    
T  3238058 gcaactgtggagactaatccctcgattattgtggaacttaaatgaacggcaagttc-ccctaagagttttaacattactgaatgttcaaggctggattcg 3237960  T
Q  254 aacccaggaccttggtt 270  Q
    |||| |||| |||||||    
T  3237959 aaccaaggatcttggtt 3237943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 5944942 - 5944865
Alignment:
Q  193 aaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||  |||||||||| |||||||||| || | |||| | ||| ||| |||||||| |||||||||||||    
T  5944942 aaatgggcggcaaactctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggtt 5944865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 17177290 - 17177180
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccc 240  Q
    ||||||||||||| ||| | | |||| |||||||||||| ||||||| | |||||| | | | |  || ||| ||||||||||||  |||||||||||||    
T  17177290 gtatcctccgcgcacaattacggagattaatccctcgagtattgtgagatccaaatagacagaaaactttccttaagagttttaaagctgctgcatgccc 17177191  T
Q  241 aaggctggatt 251  Q
    || ||| ||||    
T  17177190 aatgcttgatt 17177180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 278551 - 278419
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| ||||||||||||| | |||||||    ||||||||||| |||  |||||  ||| |||||| |||||  |||||| ||||||||||||   || |    
T  278551 taaatcgggtatcctccgtgtgcaactgtgacgactaatcccttgagttttgtgggacctaaatggacggcaaactctccataagagttttaa-tgtgtt 278453  T
Q  233 gcatgcccaaggctggattcgaacccaggacctt 266  Q
    |||||||||| ||||||||| ||| || ||||||    
T  278452 gcatgcccaaagctggattcaaactcaagacctt 278419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 15614554 - 15614691
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||| ||||||||||| | ||||||||   |||||||| ||| ||||||||||  || ||||| || || | | ||| || || |||||||||  ||||    
T  15614554 taaactgggtatcctccacacgcaactgtgaagactaattcctagagcattgtgggactcaaataggtggtaagttcttccgaaaagttttaacgttgct 15614653  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
     |||| ||||| ||| ||||||||||| ||| ||||||    
T  15614654 acatgtccaagactgaattcgaacccatgacattggtt 15614691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 133 - 255
Target Start/End: Complemental strand, 36806771 - 36806649
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||| || ||    
T  36806771 taaaccgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacgctact 36806672  T
Q  233 gcatgcccaaggctggattcgaa 255  Q
    | ||||||||||||| |||||||    
T  36806671 gtatgcccaaggctgaattcgaa 36806649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 18428123 - 18428259
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||| | |||| |||||||||| |||||||||||||||    
T  18428123 taaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtg-gggccaaatggacagcagactctccctaaaagttttaacactgct 18428221  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||| |||||||||| |||| |||||||||    
T  18428222 gcatgcccaaggttggattcgaatccagaaccttggtt 18428259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 9780971 - 9781103
Alignment:
Q  134 aaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctg 233  Q
    |||| |||||| |||||||| ||||| | || |||||||||||||||||||||  ||||||||||||||| | |||||||||||||||||||| ||||||    
T  9780971 aaactgggtattctccgcgcccaactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctg 9781070  T
Q  234 catgcccaaggctggattcgaacccaggacctt 266  Q
    ||||||||||||||||||||||| || ||||||    
T  9781071 catgcccaaggctggattcgaactcaagacctt 9781103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 16756234 - 16756105
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccc 240  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||  || || ||||||||||||||||||||| || ||||||||||    
T  16756234 gtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctgcatgccc 16756135  T
Q  241 aaggctggattcgaacccaggaccttggtt 270  Q
    || |||| |||| ||||||| |||||||||    
T  16756134 aatgctgaattcaaacccagaaccttggtt 16756105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 46864244 - 46864125
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcc 239  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||| ||||||| || |||||||||    
T  46864244 ggtatcctttgcgcgcaactgcagagactaatccctcgaacattgtgaaacccaaatggacggcaagttctccctaagaattttaacgctactgcatgcc 46864145  T
Q  240 caaggctggattcgaaccca 259  Q
    ||| |||||||| |||||||    
T  46864144 caaagctggatttgaaccca 46864125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 42297430 - 42297523
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctg 233  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||    
T  42297430 ggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaacgctgctg 42297523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 22022274 - 22022154
Alignment:
Q  139 gggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgc 238  Q
    ||||||||||| || |||||||| ||||||||||||||||  ||||||  ||||||||||| |||| | ||||||||||||||||||  |||||||||||    
T  22022274 gggtatcctccacgtgcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgc 22022175  T
Q  239 ccaaggctggattcgaaccca 259  Q
    |||||||||||||||||||||    
T  22022174 ccaaggctggattcgaaccca 22022154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 263
Target Start/End: Complemental strand, 28724830 - 28724702
Alignment:
Q  135 aaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgc 234  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||||   || ||||||| |||||| |||| ||||||||||||||||||| |||    
T  28724830 aaccgggtatcctccgcgcgcaattgcggagactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgc 28724731  T
Q  235 atgcccaaggctggattcgaacccaggac 263  Q
    |||  |||||||| ||||||| |||||||    
T  28724730 atgttcaaggctgaattcgaatccaggac 28724702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 12035702 - 12035572
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagag-ttttaacactgctgcatgcc 239  Q
    ||||| ||| || |||| ||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||| |||||||| || ||||||||    
T  12035702 gtatcatccacgtgcaattgctgagactaatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgttgcatgcc 12035603  T
Q  240 caaggctggattcgaacccaggaccttggtt 270  Q
     ||||||||||||||||| | ||| ||||||    
T  12035602 aaaggctggattcgaaccaaagactttggtt 12035572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 39547345 - 39547471
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    ||||||||  |||||| |||||||||||| |||| |||||| |||| |||||||| ||| |||| |||||||| ||| ||||||||||||| ||||||||    
T  39547345 taaaccggaaatcctctgcgcgcaactgcggagattaatccgtcgaacattgtgagacctaaataggcggcagactccccctaagagttttgacactgct 39547444  T
Q  233 gcatgcccaaggctggattcgaaccca 259  Q
    |||||| |||| |||||||||||||||    
T  39547445 gcatgctcaagactggattcgaaccca 39547471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 45806388 - 45806259
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgccc 240  Q
    ||||||||| |||| |||||||||||||||||  ||||  ||||||| ||  |||| ||||| | |||||||||||||||||||| ||||||||||||||    
T  45806388 gtatcctccacgcgtaactgcagagactaatcattcgaatattgtgagacttaaataggcggtatgctctccctaagagttttaaaactgctgcatgccc 45806289  T
Q  241 aaggctggattcgaacccaggaccttggtt 270  Q
    ||| ||| |||||||| |||||||||||||    
T  45806288 aagactgaattcgaactcaggaccttggtt 45806259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 7242795 - 7242912
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcc 239  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||| ||| |  |||||||| || || ||||||||||||||||||||  ||||||||| |    
T  7242795 ggtatcttccgcgcgcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtc 7242894  T
Q  240 caaggctggattcgaacc 257  Q
    |||| |||||||||||||    
T  7242895 caagactggattcgaacc 7242912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 15642615 - 15642526
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttt 222  Q
    |||| |||||||||||||||||||||||| |||| ||||| |||||||||||||  ||||||||||||||||  ||||||||||||||||    
T  15642615 taaatcgggtatcctccgcgcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 10750750 - 10750621
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcc 239  Q
    ||||||||| ||||||||||| | ||||||||||||||| |||||||  | |||||||||||||| || |  ||||||||||||||| ||| || |||||    
T  10750750 ggtatcctctgcgcgcaactgtaaagactaatccctcgaacattgtgcgatccaaatgggcggcaagcgc-acctaagagttttaacgctgatgtatgcc 10750652  T
Q  240 caaggctggattcgaacccaggaccttggtt 270  Q
    ||||  | |||||||||||| ||||||||||    
T  10750651 caagattagattcgaacccaagaccttggtt 10750621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 44913262 - 44913180
Alignment:
Q  140 ggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttt 222  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||||||  ||||| |||||||||| |||||||||||||||||    
T  44913262 ggtatcctctgcgcgtaactgcagagactaatctctcgagcattgtgggacccagatgggcggcaagctctccctaagagttt 44913180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 31733685 - 31733798
Alignment:
Q  146 ctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggc 245  Q
    |||||||||||||||  ||||||||| | || ||  |||||| ||||| |||| || ||  |||||||||||||||||||| |||||||||||| || ||    
T  31733685 ctccgcgcgcaactgtggagactaattcatccagtcttgtgacacccagatggacgacaaactctccctaagagttttaactctgctgcatgcctaatgc 31733784  T
Q  246 tggattcgaaccca 259  Q
    || |||||||||||    
T  31733785 tgaattcgaaccca 31733798  T

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Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 32534242 - 32534106
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgct 232  Q
    |||||| ||||||||| |||||||| ||| |||||||| | |||||||||||||| | || ||||||||| | |||||| ||||||||||||||  || |    
T  32534242 taaaccaggtatcctctgcgcgcaattgcggagactaacctctcgagcattgtgaga-cctaatgggcggtaagctctctctaagagttttaacgttgtt 32534144  T
Q  233 gcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||| ||| |||| ||| ||| |||  |||||||||    
T  32534143 gcatgctcaaagctgaatttgaatccaaaaccttggtt 32534106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 24801467 - 24801411
Alignment:
Q  207 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggac 263  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  24801467 ctctccctaagagttttaacagtgctgcatgcctaaggctggattcgaaccaaggac 24801411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 32883625 - 32883677
Alignment:
Q  207 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 259  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||||||||||    
T  32883625 ctctccctaagagttttaacgctgctgcatgtccaatgctggattcgaaccca 32883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 10367666 - 10367575
Alignment:
Q  131 tataaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttt 222  Q
    |||||| ||||||| || ||| ||||||||| |||| |||||| |||||||||||   |||||||||||||| || |||||| |||||||||    
T  10367666 tataaatcgggtattcttcgcacgcaactgcggagattaatccttcgagcattgttggacccaaatgggcggtagactctccttaagagttt 10367575  T

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Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 2044557 - 2044472
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaaga 218  Q
    |||| ||||||| |||  |||| ||||||||||||||||| || |||||||||| ||||||||| ||||| |  ||||||||||||    
T  2044557 taaatcgggtattctctacgcgaaactgcagagactaatctcttgagcattgtggaacccaaataggcggtaatctctccctaaga 2044472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 29124825 - 29124768
Alignment:
Q  213 ctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| || |||| |||||    
T  29124825 ctaagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggtt 29124768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 25655267 - 25655379
Alignment:
Q  155 caactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcga 254  Q
    |||||||||||||||||| ||  |||||||||  |   |||||| |||||  ||||| ||||||||||||||  |||||||||||||| | |  ||||||    
T  25655267 caactgcagagactaatctctttagcattgtgtgatttaaatggacggcaaactctctctaagagttttaacgttgctgcatgcccaatgttaaattcga 25655366  T
Q  255 acccaggaccttg 267  Q
    |||||| ||||||    
T  25655367 acccagaaccttg 25655379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 36087000 - 36086884
Alignment:
Q  150 gcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctgga 249  Q
    ||||||| || | |||||||||||||| ||||| |||| ||| |||| | |||||  || | | ||||||||||||||  | ||||||| |||| |||||    
T  36087000 gcgcgcagctacggagactaatccctccagcatcgtgagacctaaatagacggcaaacttttcataagagttttaacatggttgcatgcgcaagactgga 36086901  T
Q  250 ttcgaacccaggacctt 266  Q
    ||||||| |||||||||    
T  36086900 ttcgaactcaggacctt 36086884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 10841157 - 10841051
Alignment:
Q  154 gcaactgcagagactaatccctcgagcattgtgaaaccc-aaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattc 252  Q
    |||||||| || | ||||||||| |||||||||  |||| ||||||| |||| | ||||||||||| |||||||  || | |||||||||||||| |||     
T  10841157 gcaactgcggaaattaatccctcaagcattgtgggaccctaaatgggaggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaattt 10841058  T
Q  253 gaaccca 259  Q
    |||||||    
T  10841057 gaaccca 10841051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 36522259 - 36522340
Alignment:
Q  175 tcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaac 256  Q
    ||||||||||||  || ||||||| |||||  ||||||||||||||||||||  ||||||||| | ||| ||| ||||||||    
T  36522259 tcgagcattgtgggactcaaatggacggcaaactctccctaagagttttaaccttgctgcatgtctaagactgtattcgaac 36522340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 61161 - 61256
Alignment:
Q  141 gtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 237  Q
    |||||||||| | ||||||||||||| ||||||||||| |||| ||  |||||||| || ||||  |||||   |||||||||||| ||||||||||    
T  61161 gtatcctccgtgtgcaactgcagagattaatccctcgaacattatg-gacccaaataggtggcaaactctcttcaagagttttaacgctgctgcatg 61256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 49071737 - 49071673
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatg 197  Q
    |||| ||| |||| ||||| ||||||||| |||||||||| |||||||||||||  |||||||||    
T  49071737 taaatcggatatcttccgcacgcaactgcggagactaatctctcgagcattgtgggacccaaatg 49071673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 36982441 - 36982378
Alignment:
Q  207 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||||||||||||||||||  || |||||| | ||||||| ||||||||||  ||||||||||    
T  36982441 ctctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggtt 36982378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 48728107 - 48728057
Alignment:
Q  215 aagagttttaacactgctgcatgcccaaggctggattcgaacccaggacct 265  Q
    ||||| |||||||| |||||||||||| |||||||||| ||| ||||||||    
T  48728107 aagagatttaacacagctgcatgcccatggctggattcaaactcaggacct 48728057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 6643942 - 6643877
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgg 198  Q
    |||| ||| ||||||||||||||||||||||||| ||||  |||||   ||||||||| |||||||    
T  6643942 taaatcggttatcctccgcgcgcaactgcagagattaatttctcgaatgttgtgaaactcaaatgg 6643877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 32883561 - 32883622
Alignment:
Q  166 actaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaaca 227  Q
    ||||||||||||||  |||||    ||||||||||||||  |||||||||||||||||||||    
T  32883561 actaatccctcgagtcttgtggggtccaaatgggcggcaaactctccctaagagttttaaca 32883622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 35692585 - 35692508
Alignment:
Q  193 aaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtt 270  Q
    ||||| ||||||  ||||||||||||||||||||   | ||||||||||| | ||||||||||| || ||| ||||||    
T  35692585 aaatgagcggcaaactctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaactcaagacattggtt 35692508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 6607691 - 6607739
Alignment:
Q  149 cgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatg 197  Q
    |||| ||| |||| ||||||||||||||||||||||||| ||| |||||    
T  6607691 cgcgtgcagctgcggagactaatccctcgagcattgtgagacctaaatg 6607739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 28286474 - 28286540
Alignment:
Q  193 aaatgggcggcaggctctccctaagagttttaacac--tgctgcatgcccaaggctggattcgaaccc 258  Q
    ||||||||||||| |||||||||| | |||||||||  | |||||||  |||||||||||||||||||    
T  28286474 aaatgggcggcagactctccctaaaaattttaacacatttctgcatg-tcaaggctggattcgaaccc 28286540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 33059736 - 33059800
Alignment:
Q  162 agagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaac 226  Q
    |||||||||| |||| | | |||||  ||||||||||||||||  |||||| |||||||||||||    
T  33059736 agagactaattcctcaaaccttgtgggacccaaatgggcggcaaactctccttaagagttttaac 33059800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 40019327 - 40019275
Alignment:
Q  207 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 259  Q
    ||||||| ||||||||||||  ||||||||  ||||||||| |||||||||||    
T  40019327 ctctccccaagagttttaacgttgctgcatatccaaggctgaattcgaaccca 40019275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 27212 - 27296
Alignment:
Q  139 gggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagtttt 223  Q
    |||||||||||||||||||||||  ||||||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||    
T  27212 gggtatcctccgcgcgcaactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaagctctccctaagagtttt 27296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 32330 - 32381
Alignment:
Q  218 agttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggt 269  Q
    ||||||||| ||||||||| ||||||  ||||||||||||||| ||||||||    
T  32330 agttttaacgctgctgcatacccaagattggattcgaacccagaaccttggt 32381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 257
Target Start/End: Original strand, 16066 - 16164
Alignment:
Q  163 gagactaatccctcgagcattgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgc----atgcccaaggctggattcgaacc 257  Q
    ||||||||||| ||||||||||||| |||||||||| |||||  |||||| || || | |||||||||||||    |||||||||||||||||||||||    
T  16066 gagactaatccgtcgagcattgtgagacccaaatggacggcaaactctccatacgaatattaacactgctgcacgaatgcccaaggctggattcgaacc 16164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 11063 - 10979
Alignment:
Q  182 ttgtgaaacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggacctt 266  Q
    |||||||||| ||||||||||||  |||||| |||||||||||||| || |||||||||||   |||||||||||| ||||||||    
T  11063 ttgtgaaacctaaatgggcggcaaactctccgtaagagttttaacattgttgcatgcccaaaaatggattcgaacctaggacctt 10979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 29133 - 29197
Alignment:
Q  133 taaaccgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgaaacccaaatg 197  Q
    |||| |||||||||||||||||||||||  |||||||||||| |||||||||||  |||||||||    
T  29133 taaatcgggtatcctccgcgcgcaactgtggagactaatcccacgagcattgtgggacccaaatg 29197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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