View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_low_28 (Length: 287)

Name: NF3121_low_28
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_low_28
NF3121_low_28
[»] chr6 (28 HSPs)
chr6 (1-287)||(5688740-5689032)
chr6 (1-284)||(5177908-5178186)
chr6 (1-284)||(5279733-5280017)
chr6 (126-287)||(5126597-5126758)
chr6 (150-282)||(5242504-5242636)
chr6 (48-285)||(5065338-5065576)
chr6 (152-287)||(5100812-5100947)
chr6 (155-282)||(5346200-5346327)
chr6 (158-285)||(5398214-5398341)
chr6 (157-287)||(5180773-5180903)
chr6 (150-280)||(5427073-5427203)
chr6 (152-284)||(5135913-5136045)
chr6 (152-287)||(5372263-5372398)
chr6 (141-286)||(5098378-5098523)
chr6 (152-284)||(5156007-5156139)
chr6 (152-283)||(5351570-5351701)
chr6 (150-283)||(5352855-5352988)
chr6 (154-255)||(23127306-23127407)
chr6 (159-285)||(5253701-5253827)
chr6 (157-287)||(5439177-5439307)
chr6 (150-287)||(5072674-5072811)
chr6 (152-274)||(2939094-2939216)
chr6 (157-262)||(5283223-5283328)
chr6 (183-276)||(5334362-5334455)
chr6 (157-283)||(5448779-5448905)
chr6 (154-268)||(5124439-5124553)
chr6 (157-262)||(5256113-5256218)
chr6 (7-55)||(5065369-5065417)
[»] chr3 (4 HSPs)
chr3 (158-285)||(47985393-47985520)
chr3 (158-285)||(48003967-48004094)
chr3 (158-285)||(47994680-47994807)
chr3 (158-285)||(48013252-48013379)
[»] chr7 (1 HSPs)
chr7 (150-287)||(36212913-36213050)
[»] chr4 (7 HSPs)
chr4 (117-284)||(4132577-4132741)
chr4 (79-283)||(25569010-25569217)
chr4 (129-261)||(4122615-4122747)
chr4 (152-284)||(4319296-4319428)
chr4 (150-196)||(7884147-7884193)
chr4 (150-195)||(4346621-4346666)
chr4 (150-195)||(4362810-4362855)
[»] scaffold0294 (1 HSPs)
scaffold0294 (159-255)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 5688740 - 5689032
Alignment:
Q  1 acaacacattcattttcatcaccactacta---acaatgacatggtaatcttgtgcattagaagagacctctcttaatagcattcatcttcatcaccact 97  Q
    ||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5688740 acaacacattcattttcatcaccactactaccaacaatgacattgtaatcttgtgcattagaagagacctctcttaatagcattcatcttcatcaccact 5688839  T
Q  98 a---cacacaatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatg 194  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5688840 actacacacaatatcattttcttcttgttcttgacattgctccatattttcacgaattggttcatcatatacgagataaactgttgttttcttcacaatg 5688939  T
Q  195 aaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatcttcaaaggagact 287  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5688940 aaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatcttcaaaggagact 5689032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 5178186 - 5177908
Alignment:
Q  1 acaacacattcattttcatcaccactactaacaatgacatggtaatcttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactac 99  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||    
T  5178186 acaacacattcattttcatcaccactactaacaatgacattgtaatcttgtgcattagaagagacttctctgacaaagcattcatcttcatcaccactac 5178087  T
Q  100 acacaatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaacc 199  Q
    |||||||      ||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178086 acacaat------ttcttcttgttcttggcattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaacc 5177993  T
Q  200 gttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatcttcaaaggag 284  Q
    ||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5177992 gttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttcatcttcaaaggag 5177908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 5280017 - 5279733
Alignment:
Q  1 acaacacattcattttcatcaccactacta---acaatgacatggtaatcttgtgcattagaagagacctctctta-atagcattcatcttcatcaccac 96  Q
    ||||||||||||||||||||||||||||||   |||||||||| ||| |||||||||||||||||||| ||||| | | |||||||||||||||||||||    
T  5280017 acaacacattcattttcatcaccactactactaacaatgacattgtattcttgtgcattagaagagacttctctgacaaagcattcatcttcatcaccac 5279918  T
Q  97 tacacacaatatcattttcttcttgttcttgaca---ttgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaat 193  Q
    ||||||||||      ||||||||||||||| ||   ||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  5279917 tacacacaat------ttcttcttgttcttggcaatattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaat 5279824  T
Q  194 gaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatcttcaaaggag 284  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5279823 gaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttcatcttcaaaggag 5279733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 126 - 287
Target Start/End: Original strand, 5126597 - 5126758
Alignment:
Q  126 tgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctcca 225  Q
    |||||||||| |||| ||||||  |||||||||||||||| ||||||||| | ||| |||||||||||||||||||| | |||||||  ||||| ||| |    
T  5126597 tgacattgcttcatagtttcaccaattggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaa 5126696  T
Q  226 ctttgttacaaggttctatacttgatactactctctgtccctcttcatcttcaaaggagact 287  Q
    ||||||||| || |||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  5126697 ctttgttaccagcttctatacttgatactactctctccccctcctcatcttcaaaggagact 5126758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 5242504 - 5242636
Alignment:
Q  150 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 249  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||| ||| ||||||||| |||| |||||||||||||||| |||||||||||||     
T  5242504 attggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttc 5242603  T
Q  250 atactactctctgtccctcttcatcttcaaagg 282  Q
    ||||||||||| | ||||  |||||||||||||    
T  5242604 atactactctcagccccttctcatcttcaaagg 5242636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 48 - 285
Target Start/End: Original strand, 5065338 - 5065576
Alignment:
Q  48 ttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaatatcattttcttcttgttcttgacattgctccatattttca 146  Q
    |||||||| |||||||| ||| | || | ||||||||| ||||||||| ||||  |||||| |||| |  |||||| | ||||| | ||||   ||||||    
T  5065338 ttgtgcatgagaagagatctcgcctagaaagcattcattttcatcaccgctactaacaataacattcttatcttgtgcatgacactcctcccccttttca 5065437  T
Q  147 cggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatac 246  Q
       |||||||||||||||| |||||||||||||||  ||||||||| ||||||||| |||||||||  |||||  |||||||| || | |||||| ||||    
T  5065438 gcaattggttcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatac 5065537  T
Q  247 ttgatactactctctgtccctcttcatcttcaaaggaga 285  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  5065538 ttgatactactctctgcccctcctcatcttcaaaggaga 5065576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 5100812 - 5100947
Alignment:
Q  152 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 251  Q
    ||||||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  5100812 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5100911  T
Q  252 actactctctgtccctcttcatcttcaaaggagact 287  Q
    ||||| ||| |  |||| ||||||||||||||||||    
T  5100912 actaccctcagagcctcctcatcttcaaaggagact 5100947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 155 - 282
Target Start/End: Complemental strand, 5346327 - 5346200
Alignment:
Q  155 ttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatact 254  Q
    ||||||||||| |||||||| || ||| ||||||||||||||||| || |||| ||||   ||||||||||||||||||| ||||||||||||||||||     
T  5346327 ttcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgataca 5346228  T
Q  255 actctctgtccctcttcatcttcaaagg 282  Q
    |||||||| ||||| |||||||||||||    
T  5346227 actctctggccctcctcatcttcaaagg 5346200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 158 - 285
Target Start/End: Complemental strand, 5398341 - 5398214
Alignment:
Q  158 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 257  Q
    ||||||||| |||||||||||||| ||||||||||||||| | || || |||||| | |||||||| |||||||||| |||||||||||||||||||||     
T  5398341 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactacc 5398242  T
Q  258 ctctgtccctcttcatcttcaaaggaga 285  Q
    || || |||||||||| |||||||||||    
T  5398241 ctttgcccctcttcatgttcaaaggaga 5398214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 157 - 287
Target Start/End: Original strand, 5180773 - 5180903
Alignment:
Q  157 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 256  Q
    |||||||||| ||||||| || ||| ||||||||||||||||  || ||||||||| |||| ||||||||||||||||  |||||||| |||||||||||    
T  5180773 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 5180872  T
Q  257 tctctgtccctcttcatcttcaaaggagact 287  Q
     ||||| ||||||||||||||||| ||||||    
T  5180873 cctctgaccctcttcatcttcaaaagagact 5180903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 5427203 - 5427073
Alignment:
Q  150 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 249  Q
    |||||||||||||||||||||||||||  ||| ||| |||||| ||||| ||| ||||||||| |||| ||||||| |||||||| ||||||||||||||    
T  5427203 attggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttg 5427104  T
Q  250 atactactctctgtccctcttcatcttcaaa 280  Q
    |||||||||| |  ||||| |||||||||||    
T  5427103 atactactctttccccctcctcatcttcaaa 5427073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 5135913 - 5136045
Alignment:
Q  152 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 251  Q
    ||||||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  5135913 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5136012  T
Q  252 actactctctgtccctcttcatcttcaaaggag 284  Q
    ||||| ||| |  |||| |||||||||||||||    
T  5136013 actaccctcagagcctcctcatcttcaaaggag 5136045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 287
Target Start/End: Complemental strand, 5372398 - 5372263
Alignment:
Q  152 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 251  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||| | || || | |||| ||   | |||||||||||||| |||||||| |||||||    
T  5372398 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgat 5372299  T
Q  252 actactctctgtccctcttcatcttcaaaggagact 287  Q
    ||||| ||||| ||||||||||||||||||||||||    
T  5372298 actaccctctgcccctcttcatcttcaaaggagact 5372263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 286
Target Start/End: Complemental strand, 5098523 - 5098378
Alignment:
Q  141 ttttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggtt 240  Q
    |||||||  ||| ||||||||||||| |||||||||| ||| || ||||||||||||| ||| || ||||||  ||  |||||||||||||||| |||||    
T  5098523 ttttcaccaatttgttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggtt 5098424  T
Q  241 ctatacttgatactactctctgtccctcttcatcttcaaaggagac 286  Q
    |||||||||||| ||| ||||| | ||| |||||||||||||||||    
T  5098423 ctatacttgatattaccctctggctctcctcatcttcaaaggagac 5098378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 5156007 - 5156139
Alignment:
Q  152 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 251  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||    | || |||||| ||   |||||||||||||||| |||||||| |||||||    
T  5156007 tggttcatcgtatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgat 5156106  T
Q  252 actactctctgtccctcttcatcttcaaaggag 284  Q
    ||||| ||||| |||||||||||||||||||||    
T  5156107 actaccctctgcccctcttcatcttcaaaggag 5156139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 283
Target Start/End: Complemental strand, 5351701 - 5351570
Alignment:
Q  152 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 251  Q
    |||||||||||||||||||||||||  ||| || ||||||||| || | || || |||||| |||  ||||||||||||||||  |||||||||||||||    
T  5351701 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgat 5351602  T
Q  252 actactctctgtccctcttcatcttcaaagga 283  Q
    ||||  ||||| ||||| ||||||||||||||    
T  5351601 actaacctctgcccctcctcatcttcaaagga 5351570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 283
Target Start/End: Original strand, 5352855 - 5352988
Alignment:
Q  150 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 249  Q
    ||||||| ||||||||| ||||||| |||||| |||||||| |||||||  || || ||||||  ||| ||||| ||||||| || ||| || |||||||    
T  5352855 attggtttatcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttg 5352954  T
Q  250 atactactctctgtccctcttcatcttcaaagga 283  Q
    ||||||||||||| ||||| ||||||||||||||    
T  5352955 atactactctctgcccctcctcatcttcaaagga 5352988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 23127306 - 23127407
Alignment:
Q  154 gttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatac 253  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||| || ||||||||   ||||||||||| |||||||| |||||||  |||||||||    
T  23127306 gttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatac 23127405  T
Q  254 ta 255  Q
    ||    
T  23127406 ta 23127407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 5253827 - 5253701
Alignment:
Q  159 tcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactc 258  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||| |||||||||  ||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc 5253728  T
Q  259 tctgtccctcttcatcttcaaaggaga 285  Q
    | || ||||| || |||||||||||||    
T  5253727 tttgcccctcctcgtcttcaaaggaga 5253701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 287
Target Start/End: Complemental strand, 5439307 - 5439177
Alignment:
Q  157 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 256  Q
    ||||||||||||||||| ||| ||| || ||  |||||||| | || |  |||||| ||||||||||||||||||||| ||||||||||||||||  ||     
T  5439307 catcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaa 5439208  T
Q  257 tctctgtccctcttcatcttcaaaggagact 287  Q
     ||||| ||||| ||||||||||| ||||||    
T  5439207 cctctgcccctcctcatcttcaaaagagact 5439177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 287
Target Start/End: Original strand, 5072674 - 5072811
Alignment:
Q  150 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 249  Q
    |||| |||||| |||| |||||||| | |||| || |||||||||||| |||| |||| ||||   ||||||||||||| ||||| ||| ||||||||||    
T  5072674 attgattcatcgtatatgagataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttg 5072773  T
Q  250 atactactctctgtccctcttcatcttcaaaggagact 287  Q
    |||||| |||||  ||||| |||||||  |||||||||    
T  5072774 atactaatctctcgccctcatcatctttgaaggagact 5072811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 274
Target Start/End: Complemental strand, 2939216 - 2939094
Alignment:
Q  152 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 251  Q
    ||||||||||||||||||||||| |||||  |||||||||||| || | || || | |||| ||   |||||||||||||||| ||||| || |||||||    
T  2939216 tggttcatcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgat 2939117  T
Q  252 actactctctgtccctcttcatc 274  Q
    ||||| ||||| || ||||||||    
T  2939116 actaccctctgcccttcttcatc 2939094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 5283223 - 5283328
Alignment:
Q  157 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 256  Q
    |||||||||| ||||||| || ||| |||||||||||||||| ||| ||||||||| | |  ||||||||||||||||  ||||| |||||||||| |||    
T  5283223 catcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatgacctccactttgttacctggttcgatacttgatattac 5283322  T
Q  257 tctctg 262  Q
     |||||    
T  5283323 cctctg 5283328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 5334455 - 5334362
Alignment:
Q  183 ttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatctt 276  Q
    ||||||| ||||||| | || || |||||| |||| |||||||||||||||| |||||||| || ||||||||| ||||  |||||||||||||    
T  5334455 ttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctt 5334362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 5448905 - 5448779
Alignment:
Q  157 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 256  Q
    |||||||||| ||||| |||  ||| |||| |||| ||||| | || || |||||| |||| | |||||||||||| |  |||||||||||||||||||     
T  5448905 catcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaa 5448806  T
Q  257 tctctgtccctcttcatcttcaaagga 283  Q
     ||||| ||||| | ||||||||||||    
T  5448805 cctctgcccctccttatcttcaaagga 5448779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 5124439 - 5124553
Alignment:
Q  154 gttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatac 253  Q
    ||||||||||||  | ||| | |||||| | |||||||||||| | ||| | ||||||| ||||||  |||||||| |||| |||||||||||| |||||    
T  5124439 gttcatcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatac 5124538  T
Q  254 tactctctgtccctc 268  Q
    || ||| || |||||    
T  5124539 taatctatgcccctc 5124553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 5256113 - 5256218
Alignment:
Q  157 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 256  Q
    |||||||||| | ||||| || ||| ||||||||||||||| | || |  |||||| | || ||||||||||||||||  ||||| |||||||||| |||    
T  5256113 catcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattac 5256212  T
Q  257 tctctg 262  Q
     |||||    
T  5256213 cctctg 5256218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 5065369 - 5065417
Alignment:
Q  7 cattcattttcatcaccactactaacaatgacatggtaatcttgtgcat 55  Q
    ||||||||||||||||| ||||||||||| ||||  | |||||||||||    
T  5065369 cattcattttcatcaccgctactaacaataacattcttatcttgtgcat 5065417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 47985393 - 47985520
Alignment:
Q  158 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 257  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  |||||||||||||||||||||    
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  258 ctctgtccctcttcatcttcaaaggaga 285  Q
    ||||  ||||| |||||| |||||||||    
T  47985493 ctctccccctcctcatctccaaaggaga 47985520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 48003967 - 48004094
Alignment:
Q  158 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 257  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  |||||||||||||||||||||    
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  258 ctctgtccctcttcatcttcaaaggaga 285  Q
    ||||  ||||| |||||| |||||||||    
T  48004067 ctctccccctcctcatctccaaaggaga 48004094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 47994680 - 47994807
Alignment:
Q  158 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 257  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  | |||||||||||||||||||    
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  258 ctctgtccctcttcatcttcaaaggaga 285  Q
    ||||  ||||| |||||| |||||||||    
T  47994780 ctctccccctcctcatctccaaaggaga 47994807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 48013252 - 48013379
Alignment:
Q  158 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 257  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  | |||||||||||||||||||    
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  258 ctctgtccctcttcatcttcaaaggaga 285  Q
    ||||  ||||| |||||| |||||||||    
T  48013352 ctctccccctcctcatctccaaaggaga 48013379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 150 - 287
Target Start/End: Original strand, 36212913 - 36213050
Alignment:
Q  150 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 249  Q
    |||||||||||||| | ||||||||  | ||| |||||||||||||||  ||| |||||||||  ||||||||||| ||| | || ||||||||||||||    
T  36212913 attggttcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttg 36213012  T
Q  250 atactactctctgtccctcttcatcttcaaaggagact 287  Q
    |||||| |||||| ||||| ||||||||||| ||||||    
T  36213013 atactaatctctgcccctcctcatcttcaaatgagact 36213050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 117 - 284
Target Start/End: Original strand, 4132577 - 4132741
Alignment:
Q  117 tcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaa 216  Q
    |||||| | ||||||||| ||| ||||||||  |||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  |||||||   ||    
T  4132577 tcttgtgcatgacattgccccaaattttcaccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaac---aa 4132673  T
Q  217 caacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatcttcaaaggag 284  Q
    ||| ||| ||||||| || |||||| ||| |||||||||||||||| | ||| |||| ||||||||||    
T  4132674 caatctcgactttgtcaccaggttccatatttgatactactctctgccactcctcattttcaaaggag 4132741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 79 - 283
Target Start/End: Complemental strand, 25569217 - 25569010
Alignment:
Q  79 attcatcttcatcaccactacacacaatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgt 178  Q
    |||||| |||||||||| || | |||||| |||||||||||  |  ||||| |||||||||  |||| |  ||| ||||||| |||||||||||||||||    
T  25569217 attcattttcatcaccaataaaaacaatagcattttcttctgatgtttgactttgctccattatttcgccaattagttcatcgtatacgagataaactgt 25569118  T
Q  179 tgttttcttcacaatgaaaccgttg---tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 275  Q
    ||| ||||||||  |||||| |      ||||||||| ||||||||||||||||||| | |||||||||||||||||||||| | || ||||| || | |    
T  25569117 tgtattcttcactttgaaactgcgccactcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactactatatgcccctcctcgttt 25569018  T
Q  276 tcaaagga 283  Q
    ||||||||    
T  25569017 tcaaagga 25569010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 261
Target Start/End: Original strand, 4122615 - 4122747
Alignment:
Q  129 cattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactt 228  Q
    |||||||| || ||||||| ||||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  ||||||||  ||||| ||||||||    
T  4122615 cattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactt 4122714  T
Q  229 tgttacaaggttctatacttgatactactctct 261  Q
    ||| || |||||| ||| ||||||| |||||||    
T  4122715 tgtcaccaggttccatatttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 4319296 - 4319428
Alignment:
Q  152 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 251  Q
    |||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  |||||||   ||||| |||||| |||| || |||||| ||| ||| |    
T  4319296 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtcaccaggttccatatttgtt 4319395  T
Q  252 actactctctgtccctcttcatcttcaaaggag 284  Q
    || |||||||| | ||| |||| ||||||||||    
T  4319396 acaactctctgccactcctcattttcaaaggag 4319428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 7884147 - 7884193
Alignment:
Q  150 attggttcatcatatacgagataaactgttgttttcttcacaatgaa 196  Q
    |||||||||||||| || ||||||| |||||||||||||||||||||    
T  7884147 attggttcatcatagacaagataaattgttgttttcttcacaatgaa 7884193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 4346666 - 4346621
Alignment:
Q  150 attggttcatcatatacgagataaactgttgttttcttcacaatga 195  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||    
T  4346666 attggttcatcatatatgagataaactgctgtcttcgtcacaatga 4346621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 4362855 - 4362810
Alignment:
Q  150 attggttcatcatatacgagataaactgttgttttcttcacaatga 195  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||    
T  4362855 attggttcatcatatatgagataaactgctgtcttcgtcacaatga 4362810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 7878 - 7974
Alignment:
Q  159 tcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 255  Q
    |||||||  ||||||| ||||||||  ||| ||||||||||||   ||||||||  |||||||||||||||||| |  ||||||| |||||||||||    
T  7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatacta 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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