View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3121_low_29 (Length: 285)
Name: NF3121_low_29
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 33080405 - 33080646
Alignment:
| Q |
26 |
ttaaacactaaaccttaaaccatcatcatgtcggagacattaaagaaatagctggttaaatttccttgtaataaagaaggaagaaatatagctgcaattg |
125 |
Q |
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| T |
33080405 |
ttaaacactaaaccgtaaaccctaatcatgtgggagacgttaaa-aaatagctggttaaatttccatgtaataaagaatgaagtaacatagctgcaattg |
33080503 |
T |
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| Q |
126 |
aaagaatatataactgcaattgaagtgttaattatgtaggagacattaaataaagaatatataacgctaattgaagtgttaatttgtggtaaatcatgcc |
225 |
Q |
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| T |
33080504 |
aaagaatatataactgcaattgaagtgataattatgtatgagacattaaagaaagaatatatgacgctaattgaagtgttaatttgtgggcaatcatgcc |
33080603 |
T |
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| Q |
226 |
tgagacattaaagaaatagatttgttaaatttgcttacgataa |
268 |
Q |
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| T |
33080604 |
tgagacattaaagaaatatatttgtgaaattttcttatgataa |
33080646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 33095204 - 33095248
Alignment:
| Q |
110 |
aatatagctgcaattgaaagaatatataactgcaattgaagtgtt |
154 |
Q |
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| T |
33095204 |
aatatagctgcaattgaaagaatatataactgcaattgaagtgtt |
33095248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 33095149 - 33095184
Alignment:
| Q |
227 |
gagacattaaagaaatagatttgttaaatttgctta |
262 |
Q |
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| T |
33095149 |
gagacattaaagaaatagatttgctaaatttgctta |
33095184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 22764539 - 22764696
Alignment:
| Q |
1 |
atatattataactgtaattgaagtgttaaacactaaaccttaaaccatcatcatgtcggagacattaaagaaatagctggttaaatttccttgtaataaa |
100 |
Q |
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| T |
22764539 |
atatattataactgtaattgaagtgttaaacactaaaccttaaaccctcatcatgtcagagacattaaagaaatagctggttaaatttccttgtaataaa |
22764638 |
T |
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| Q |
101 |
gaaggaagaaatatagctgcaattgaaagaatatataactgcaattgaagtgttaatt |
158 |
Q |
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| T |
22764639 |
gaaggaagaaatatagctgcaattgaaagaatatataactgcaattgaagtgttaatt |
22764696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 22764664 - 22764752
Alignment:
| Q |
177 |
aaagaatatataacgctaattgaagtgttaatttgtggtaaatcatgcctgagacattaaagaaatagatttgttaaatttgcttacgat |
266 |
Q |
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| T |
22764664 |
aaagaatatataactgcaattgaagtgttaatttgtgg-aaatcatgcctgagacattaaagaaatagatttgttaaatttgcttacgat |
22764752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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