View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_low_31 (Length: 270)

Name: NF3121_low_31
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_low_31
NF3121_low_31
[»] chr1 (12 HSPs)
chr1 (10-225)||(47771202-47771417)
chr1 (22-221)||(47775304-47775503)
chr1 (85-196)||(6502829-6502940)
chr1 (90-199)||(6525530-6525639)
chr1 (99-200)||(47743674-47743775)
chr1 (99-200)||(47758075-47758176)
chr1 (98-193)||(6510466-6510561)
chr1 (99-193)||(47700915-47701009)
chr1 (98-187)||(6514865-6514954)
chr1 (99-193)||(47711197-47711291)
chr1 (98-193)||(6497483-6497578)
chr1 (99-175)||(47627684-47627760)
[»] chr5 (5 HSPs)
chr5 (24-225)||(27368242-27368441)
chr5 (85-205)||(28828661-28828781)
chr5 (86-205)||(28859750-28859869)
chr5 (99-205)||(28854376-28854482)
chr5 (161-205)||(28874406-28874450)
[»] scaffold0341 (2 HSPs)
scaffold0341 (85-196)||(4508-4619)
scaffold0341 (98-193)||(12146-12241)
[»] chr8 (1 HSPs)
chr8 (99-200)||(11225253-11225354)
[»] chr4 (1 HSPs)
chr4 (126-199)||(31702568-31702641)
[»] chr7 (2 HSPs)
chr7 (99-175)||(19939325-19939401)
chr7 (99-175)||(19970464-19970540)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 47771417 - 47771202
Alignment:
Q  10 aaaagaatttacagagaaaaatattacttacaaagctcaatagatactctacatcatttccatgaccaatgtttgtactatttttatgaccacttataat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47771417 aaaagaatttacagagaaaaatattacttacaaagctcaatagatactccacatcatttccatgaccaatgtttgtactatttttatgaccacttataat 47771318  T
Q  110 ctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgcatgccaatata 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47771317 ctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgcatgccaatata 47771218  T
Q  210 gacgagcttaattagt 225  Q
    ||||||||||||||||    
T  47771217 gacgagcttaattagt 47771202  T

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Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 47775503 - 47775304
Alignment:
Q  22 agagaaaaatattacttacaaagctcaatagatactctacatcatttccatgaccaatgtttgtactatttttatgaccacttataatctcaagaaccaa 121  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47775503 agagaaaaataatacttacataactcaatagatactctacatcatttccttgaccaatgtttgtactatttttatgaccacttaaaatctcaagaaccaa 47775404  T
Q  122 taccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgcatgccaatatagacgagcttaat 221  Q
    ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||  ||||||||    
T  47775403 tactccgaaactaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatatatccactgcataccaatatagagaagcttaat 47775304  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 6502829 - 6502940
Alignment:
Q  85 tactatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgc 184  Q
    |||||||||||  |||||||| ||| |||||||||||||  ||||| || |||||||| |||||||||||||||||||| |||||| |||||||||||||    
T  6502829 tactatttttagcaccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgc 6502928  T
Q  185 catgtatccgct 196  Q
    ||| ||||||||    
T  6502929 catatatccgct 6502940  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 6525639 - 6525530
Alignment:
Q  90 tttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgt 189  Q
    ||||| || ||||||||||||||||||| |||||| ||||| ||||| ||||| || || || |||||||||||||||||||||||||| |||||||| |    
T  6525639 tttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatat 6525540  T
Q  190 atccgctgca 199  Q
    |||| |||||    
T  6525539 atccactgca 6525530  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 47743674 - 47743775
Alignment:
Q  99 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgc 198  Q
    |||||||||||||| | ||| | ||| ||||| ||||| ||||| |||||||||||||||| ||||  ||||||||||||||| ||||| ||||| ||||    
T  47743674 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 47743773  T
Q  199 at 200  Q
    ||    
T  47743774 at 47743775  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 47758075 - 47758176
Alignment:
Q  99 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgc 198  Q
    |||||||||||||| | ||| | ||| ||||| ||||| ||||| |||||||||||||||| ||||  ||||||||||||||| ||||| ||||| ||||    
T  47758075 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 47758174  T
Q  199 at 200  Q
    ||    
T  47758175 at 47758176  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 6510466 - 6510561
Alignment:
Q  98 accacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc 193  Q
    |||||||| ||| || | ||||||||  ||||| ||||||||||| |||||||| ||||| ||||| |||||| |||||||||||||||| |||||    
T  6510466 accacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatcc 6510561  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 47700915 - 47701009
Alignment:
Q  99 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc 193  Q
    |||||||||||||| ||||| | ||| ||||| ||||| ||||||||||| || ||||||||||||  ||||||||| ||  ||||||| |||||    
T  47700915 ccacttataatctctagaactagtacgccaaaactaaaaacatccgatttgactgaaaattgtccaaacattgcatattcgagtgccatatatcc 47701009  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 6514865 - 6514954
Alignment:
Q  98 accacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccat 187  Q
    |||||||| ||| |||||||| ||||  ||||| ||||||||||| ||||||   ||||||||||||||| | |||||||| ||||||||    
T  6514865 accacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccat 6514954  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 47711197 - 47711291
Alignment:
Q  99 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc 193  Q
    |||||||||||||| | ||| ||||| ||||| ||||| ||||| |||||||||||||||| ||||  | || ||||||| || ||||| |||||    
T  47711197 ccacttataatctccaaaactaatactccaaaactaaaaacatctgattttaccgaaaattctccaaaccttacatactcgggagccatatatcc 47711291  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 6497483 - 6497578
Alignment:
Q  98 accacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc 193  Q
    ||||||||  || |||||||||||||  || || || || |||||||| || || ||||||||||| ||||| ||||| ||||||||||| |||||    
T  6497483 accacttacgatttcaagaaccaatataccgaaactgaatacatccgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatcc 6497578  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 47627760 - 47627684
Alignment:
Q  99 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcata 175  Q
    ||||| |||||||| |||||||  || ||||| ||||| ||||| || ||  | |||||||||||||||||||||||    
T  47627760 ccactaataatctcgagaaccatcactccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcata 47627684  T

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Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 27368242 - 27368441
Alignment:
Q  24 agaaaaatattacttacaaagctcaatagatactctacatcatttccatgaccaatgtttgtactatttttatgaccacttataatctcaagaaccaata 123  Q
    |||||| ||| ||||||| |||||||||||||||| | ||| |  ||||||  |||||||| ||||||||||||||||||||||||||||||||  ||||    
T  27368242 agaaaagtataacttacatagctcaatagatactccatatcctccccatgaaaaatgtttgcactatttttatgaccacttataatctcaagaagtaata 27368341  T
Q  124 ccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgcatgccaatatagacgagcttaatta 223  Q
    | ||||| ||| ||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||| ||  |||||| ||||||||||    
T  27368342 ctccaaaactatagacatctgattttaccgaaaattctccatgcatcgcatactcaggtgccatatatccactgcatgtca--atagacaagcttaatta 27368439  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 28828661 - 28828781
Alignment:
Q  85 tactatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgc 184  Q
    ||||||| || || |||||||||||||||||||| | ||| ||||| | ||||||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  28828661 tactattcttttggccacttataatctcaagaactagtacaccaaaaccaaagacatctgatttcaccgaaaattctccatgcattacatactcaggtgc 28828760  T
Q  185 catgtatccgctgcatgccaa 205  Q
    ||||||||| || ||||||||    
T  28828761 catgtatccactacatgccaa 28828781  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 28859750 - 28859869
Alignment:
Q  86 actatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgcc 185  Q
    |||||| || || ||||||||||||||||||||||  || ||||| ||||||||||| ||||| || ||||||| |||||||||| ||||||||||||||    
T  28859750 actattcttttggccacttataatctcaagaaccagaacaccaaaactaaagacatctgatttcactgaaaattctccatgcattacatactcaggtgcc 28859849  T
Q  186 atgtatccgctgcatgccaa 205  Q
    || |||||||| ||||||||    
T  28859850 atatatccgctacatgccaa 28859869  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 28854376 - 28854482
Alignment:
Q  99 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgc 198  Q
    |||||||||||||||||||| | ||| ||||| || |||||||| |||||||| ||||||| |||||||||| |||||||||||||||| || ||||| |    
T  28854376 ccacttataatctcaagaactagtacaccaaaactgaagacatctgattttactgaaaattctccatgcattacatactcaggtgccatatacccgctac 28854475  T
Q  199 atgccaa 205  Q
    |||||||    
T  28854476 atgccaa 28854482  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 28874406 - 28874450
Alignment:
Q  161 tccatgcattgcatactcaggtgccatgtatccgctgcatgccaa 205  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||    
T  28874406 tccatgcattacatactcaggtgccatatatccgctacatgccaa 28874450  T

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Target: scaffold0341 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 4508 - 4619
Alignment:
Q  85 tactatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgc 184  Q
    |||||||||||  |||||||| ||| |||||||||||||  ||||| || |||||||| |||||||||||||||||||| |||||| |||||||||||||    
T  4508 tactatttttagcaccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgc 4607  T
Q  185 catgtatccgct 196  Q
    ||| ||||||||    
T  4608 catatatccgct 4619  T

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Target: scaffold0341; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 12146 - 12241
Alignment:
Q  98 accacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc 193  Q
    |||||||| ||| || | ||||||||  ||||| ||||||||||| |||||||| ||||| ||||| |||||| |||||||||||||||| |||||    
T  12146 accacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatcc 12241  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 11225354 - 11225253
Alignment:
Q  99 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgc 198  Q
    |||||||||||||| | ||| | ||| ||||| ||||| ||||| |||||||||||||||| ||||  ||||||||||||||| ||||| ||||| ||||    
T  11225354 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 11225255  T
Q  199 at 200  Q
    ||    
T  11225254 at 11225253  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 31702641 - 31702568
Alignment:
Q  126 ccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgca 199  Q
    |||||||| || ||||||||||| || |||||||||||||  || |||||||| ||||||||||| || |||||    
T  31702641 ccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgca 31702568  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 19939401 - 19939325
Alignment:
Q  99 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcata 175  Q
    ||||| |||||||||||||  || || ||||||||||||||||| |||||  | |||||  |||| |||||||||||    
T  19939401 ccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcata 19939325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 19970540 - 19970464
Alignment:
Q  99 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcata 175  Q
    ||||| |||||||||||||  || || ||||||||||||||||| |||||  | |||||  |||| |||||||||||    
T  19970540 ccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcata 19970464  T

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