View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3121_low_34 (Length: 254)
Name: NF3121_low_34
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 6815333 - 6815525
Alignment:
| Q |
47 |
gtataaataatgaaacaaattttaaccattagattgtaaagttatatgattcttattatacaccaacaacacccaatactttttattttcctgtcacttc |
146 |
Q |
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| T |
6815333 |
gtataaataatgaaacaaattttaaccattagattgtaaagttatatgattcttattatacaccaataactcccaatactttttattttactgtcacttt |
6815432 |
T |
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| Q |
147 |
tcctattatctttcctctttttcatacatccatctttcttcattgtagatctccaccatctctttgtcattgcagttatttacgaatgttttt |
239 |
Q |
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| T |
6815433 |
tcctattctctttcctcttcttcatacatccatctttcttcattgtagatatccaccatctctttgccattgcagttatttacgaatgttttt |
6815525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 1670272 - 1670465
Alignment:
| Q |
46 |
ggtataaataatgaaacaaattttaaccattagattgtaaagttatatgattcttattatacaccaacaacacccaatactttttattttcctgtcactt |
145 |
Q |
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| T |
1670272 |
ggtataaataataaaacaaattttaaccattaaattgtaaaatcatatgattcttattatacaccaacaacacccaatactttttattttaccgtcattt |
1670371 |
T |
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| Q |
146 |
ctcctattatctttcctctttttcatacatccatctttcttcattgtagatctccaccatctctttgtcattgcagttatttacgaatgttttt |
239 |
Q |
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| T |
1670372 |
ttcctattctctttcctcttcttcatacatccatctttcttcattgcagatctccaccatctctttgccattgcagttatttacgaatgttttt |
1670465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 53648935 - 53648742
Alignment:
| Q |
46 |
ggtataaataatgaaacaaattttaaccattagattgtaaagttatatgattcttattatacaccaacaacacccaatactttttattttcctgtcactt |
145 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||| |
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| T |
53648935 |
ggtataaataatgaaacaaattttaaccattaaattgtaaaatcatatgattcttattatacaccaataacatccaatactttttattttaccgtcactt |
53648836 |
T |
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| Q |
146 |
ctcctattatctttcctctttttcatacatccatctttcttcattgtagatctccaccatctctttgtcattgcagttatttacgaatgttttt |
239 |
Q |
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| T |
53648835 |
tttctattgtctttcctcttcttcatacattcatctttcttcattgcagatccccaccatctctttgccattgcagttatttacgaatgttttt |
53648742 |
T |
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