View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_low_35 (Length: 250)

Name: NF3121_low_35
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_low_35
NF3121_low_35
[»] scaffold0907 (1 HSPs)
scaffold0907 (1-194)||(247-440)
[»] chr6 (7 HSPs)
chr6 (193-236)||(136623-136666)
chr6 (188-239)||(30232980-30233031)
chr6 (194-239)||(30231475-30231520)
chr6 (191-239)||(11968551-11968599)
chr6 (195-239)||(138280-138324)
chr6 (195-239)||(146301-146345)
chr6 (189-239)||(11967240-11967290)
[»] chr2 (4 HSPs)
chr2 (190-239)||(1147742-1147791)
chr2 (194-239)||(1149262-1149307)
chr2 (195-239)||(1309396-1309440)
chr2 (192-235)||(8320777-8320820)
[»] chr7 (6 HSPs)
chr7 (195-239)||(26146781-26146825)
chr7 (193-239)||(26135637-26135683)
chr7 (196-239)||(10957228-10957271)
chr7 (194-239)||(10955842-10955887)
chr7 (191-239)||(43442837-43442885)
chr7 (194-239)||(8426960-8427005)
[»] chr4 (9 HSPs)
chr4 (192-239)||(1521268-1521315)
chr4 (190-239)||(1519804-1519853)
chr4 (194-239)||(35350182-35350227)
chr4 (193-236)||(39057844-39057887)
chr4 (195-239)||(35348795-35348839)
chr4 (195-239)||(39056423-39056467)
chr4 (190-239)||(26629784-26629833)
chr4 (194-239)||(26631293-26631338)
chr4 (198-239)||(36846633-36846674)
[»] chr5 (7 HSPs)
chr5 (194-239)||(28702566-28702611)
chr5 (191-235)||(1102612-1102656)
chr5 (183-239)||(41144592-41144648)
chr5 (194-234)||(1104047-1104087)
chr5 (191-239)||(10735757-10735805)
chr5 (189-239)||(10737012-10737062)
chr5 (193-239)||(35081511-35081557)
[»] chr1 (7 HSPs)
chr1 (195-239)||(26286410-26286454)
chr1 (195-239)||(26287858-26287902)
chr1 (189-239)||(5611718-5611768)
chr1 (193-239)||(5613159-5613205)
chr1 (192-235)||(48527529-48527572)
chr1 (192-236)||(15978888-15978932)
chr1 (195-235)||(48528975-48529015)
[»] chr3 (2 HSPs)
chr3 (195-239)||(37416512-37416556)
chr3 (196-239)||(45147272-45147315)
[»] chr8 (3 HSPs)
chr8 (196-239)||(43202095-43202138)
chr8 (191-239)||(24306199-24306247)
chr8 (195-239)||(31844366-31844410)


Alignment Details
Target: scaffold0907 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0907
Description:

Target: scaffold0907; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 440 - 247
Alignment:
Q  1 ttaagggatggtcaactatgcagcaggcatattcatgttagtggaaacataatggcccatataattcaaaacaaaatccaggcgaataacacaattcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  440 ttaagggatggtcaactatgcagcaggcatattcatgttagtggaaacataatggcccatataattcaaaacaaaatccaggcgaataacacaattcttg 341  T
Q  101 ataaagatatggaactcaatttgcaacttgtccaactcagctttgtcaaatacagtattccctcctttttcaaaactttagatgttagatttta 194  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  340 ataaagatatggaactaaatttgcaacttgtccaactcagctttgtcaaatacagtattccctcctttttcaaaactttagatgttagatttta 247  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 136623 - 136666
Alignment:
Q  193 taggcttaattggacttttcgtcccctaactaatttgttgtttt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  136623 taggcttaattggacttttcgtcccctaactaatttgttgtttt 136666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 30233031 - 30232980
Alignment:
Q  188 gattttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  30233031 gattttaggcttaattggacttttggtcccctaactagtttgttgttttcat 30232980  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 30231475 - 30231520
Alignment:
Q  194 aggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||    
T  30231475 aggcttaattggacttttggtcccttaactaatttgttgttttcat 30231520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 11968599 - 11968551
Alignment:
Q  191 tttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  11968599 tttaagcttaattggatttttggtcccctaactaatttgttgttttcat 11968551  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 138324 - 138280
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||    
T  138324 ggcttaatttgacttttggtcccctaactaatttgatgttttcat 138280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 146345 - 146301
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||    
T  146345 ggcttaatttgacttttggtcccctaactaatttgatgttttcat 146301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 11967240 - 11967290
Alignment:
Q  189 attttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||| || ||||||| |||||| ||||||||| |||||||||||||||||    
T  11967240 atttttggtttaattgtacttttggtcccctaattaatttgttgttttcat 11967290  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 1147742 - 1147791
Alignment:
Q  190 ttttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  1147742 ttttcggcttaattggacttttggtcccctaactaatttgttgttttcat 1147791  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 1149307 - 1149262
Alignment:
Q  194 aggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  1149307 aggcttaattggacttttggtcccctaactaatttgttgttttcat 1149262  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 1309396 - 1309440
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||    
T  1309396 ggcttaattggatttttggtcccctaagtaatttgttgttttcat 1309440  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 8320777 - 8320820
Alignment:
Q  192 ttaggcttaattggacttttcgtcccctaactaatttgttgttt 235  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||    
T  8320777 ttaggcttaattggacttttggtcccctaagtaatttcttgttt 8320820  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 26146825 - 26146781
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  26146825 ggcttaattggacttttggtcccctaactaatttgttgttttcat 26146781  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 26135637 - 26135683
Alignment:
Q  193 taggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26135637 taggcttaattggacttttggtcccctaactaatttgatgttttcat 26135683  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 10957271 - 10957228
Alignment:
Q  196 gcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  10957271 gcttaattggacttttggtcccctaagtaatttgttgttttcat 10957228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 10955842 - 10955887
Alignment:
Q  194 aggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||||| ||||| ||| |||||||||||||||||    
T  10955842 aggcttaattggacttttggtcccttaagtaatttgttgttttcat 10955887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 43442885 - 43442837
Alignment:
Q  191 tttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||| ||||||| |||||| ||||||||| |||||||||||||||||    
T  43442885 tttaggtttaattgaacttttggtcccctaagtaatttgttgttttcat 43442837  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 8427005 - 8426960
Alignment:
Q  194 aggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||||| ||||||||| ||||||  |||||||||    
T  8427005 aggcttaattggacttttagtcccctaattaatttcatgttttcat 8426960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 1521315 - 1521268
Alignment:
Q  192 ttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||    
T  1521315 ttaggcttaattggacttttggtcctctaactaatttgttgttttcat 1521268  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 1519804 - 1519853
Alignment:
Q  190 ttttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||||||    
T  1519804 tttttggcttaattggacttttggtcccctaactaatttgtcgttttcat 1519853  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 35350227 - 35350182
Alignment:
Q  194 aggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  35350227 aggcttaattggacttttggtcccctaagtaatttgttgttttcat 35350182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 39057887 - 39057844
Alignment:
Q  193 taggcttaattggacttttcgtcccctaactaatttgttgtttt 236  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  39057887 taggcttaattggacttttggtcccctaagtaatttgttgtttt 39057844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 35348795 - 35348839
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||    
T  35348795 ggcttaattggacttttggtcccttaagtaatttgttgttttcat 35348839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 39056423 - 39056467
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||    
T  39056423 ggcttaattggacttttggtcccttaagtaatttgttgttttcat 39056467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 26629784 - 26629833
Alignment:
Q  190 ttttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||| ||||||||||||||||| ||||| ||| ||| |||||||||||||    
T  26629784 tttttggcttaattggacttttggtcccttaagtaaattgttgttttcat 26629833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 26631338 - 26631293
Alignment:
Q  194 aggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||||| |||||| || ||||||||| |||||||    
T  26631338 aggcttaattggacttttggtcccccaagtaatttgttattttcat 26631293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 36846674 - 36846633
Alignment:
Q  198 ttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||| | ||||||| |||||||||||||||||    
T  36846674 ttaattggacttttggccccctaagtaatttgttgttttcat 36846633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 28702566 - 28702611
Alignment:
Q  194 aggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  28702566 aggcttaattggactttttgtcccctaagtaatttgttgttttcat 28702611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 1102612 - 1102656
Alignment:
Q  191 tttaggcttaattggacttttcgtcccctaactaatttgttgttt 235  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||    
T  1102612 tttaggcttaattggacttttggtcccataactaatttgttgttt 1102656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 41144648 - 41144592
Alignment:
Q  183 tgttagattttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||| ||||| |||||||||||| |||| ||||||||| |||||||||||||||||    
T  41144648 tgttatatttttggcttaattggatttttggtcccctaattaatttgttgttttcat 41144592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 1104087 - 1104047
Alignment:
Q  194 aggcttaattggacttttcgtcccctaactaatttgttgtt 234  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  1104087 aggcttaattggacttttggtcccctaagtaatttgttgtt 1104047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 10735757 - 10735805
Alignment:
Q  191 tttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||||||||||||| ||||||||| |||||  ||||||||||    
T  10735757 tttaggcttaattggacttttggtcccctaagtaattacttgttttcat 10735805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 10737062 - 10737012
Alignment:
Q  189 attttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||| || |||||||||||||| ||||||||| |||||| ||||||||||    
T  10737062 atttttggtttaattggacttttggtcccctaagtaatttcttgttttcat 10737012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 35081557 - 35081511
Alignment:
Q  193 taggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||||||||||| ||||||||| |||||  ||||||||||    
T  35081557 taggcttaattggacttttggtcccctaagtaattgtttgttttcat 35081511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 26286410 - 26286454
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||    
T  26286410 ggcttaattggacttttggtcccctaactaatttgtcgttttcat 26286454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 26287902 - 26287858
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||    
T  26287902 ggcttaattggacttttggtcctctaactaatttgttgttttcat 26287858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 5611718 - 5611768
Alignment:
Q  189 attttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||| ||||||||||||||||| ||||  |||||||||||||||||||||    
T  5611718 atttttggcttaattggacttttggtcctttaactaatttgttgttttcat 5611768  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 5613205 - 5613159
Alignment:
Q  193 taggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||    
T  5613205 taggcttaattggacttttgatcccctaactaatttgtcgttttcat 5613159  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 48527529 - 48527572
Alignment:
Q  192 ttaggcttaattggacttttcgtcccctaactaatttgttgttt 235  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||    
T  48527529 ttaggcttaattggatttttggtcccctaagtaatttgttgttt 48527572  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 15978888 - 15978932
Alignment:
Q  192 ttaggcttaattggacttttcgtcccctaactaatttgttgtttt 236  Q
    ||||||||||||| || ||| ||||||||||| ||||||||||||    
T  15978888 ttaggcttaattgaacctttggtcccctaactcatttgttgtttt 15978932  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 48529015 - 48528975
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttt 235  Q
    ||||||||||||||||| |||||| || |||||||||||||    
T  48529015 ggcttaattggacttttggtcccccaagtaatttgttgttt 48528975  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 37416556 - 37416512
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||| ||||| ||||||||| |||||||||||||||||    
T  37416556 ggcttaattggccttttggtcccctaagtaatttgttgttttcat 37416512  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 45147272 - 45147315
Alignment:
Q  196 gcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||    
T  45147272 gcttaattgaacttttggtcccctaacttatttgttgttttcat 45147315  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 43202095 - 43202138
Alignment:
Q  196 gcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||||||||  |||||||| |||||||||||||||||    
T  43202095 gcttaattggacttttgatcccctaagtaatttgttgttttcat 43202138  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 24306247 - 24306199
Alignment:
Q  191 tttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    |||||||||||| |||||||| || |||||| |||||| ||||||||||    
T  24306247 tttaggcttaataggacttttggttccctaagtaatttcttgttttcat 24306199  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 31844366 - 31844410
Alignment:
Q  195 ggcttaattggacttttcgtcccctaactaatttgttgttttcat 239  Q
    ||||||||||||||||| |||||  || |||||||||||||||||    
T  31844366 ggcttaattggacttttggtccctaaagtaatttgttgttttcat 31844410  T

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