View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3121_low_38 (Length: 236)
Name: NF3121_low_38
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_low_38 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 10661320 - 10661099
Alignment:
| Q |
15 |
aataagttgtcaggagaggtaccatccattataggcaacctcagtcaattatatcttttgagtataagagataatatgttaggaggaaatattccttcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10661320 |
aataagttgtcaggagaggtaccatccattataggcaacctcagtcaattatatcttttgagtataagagataatatgttaggaggaaatattccttcaa |
10661221 |
T |
|
| Q |
115 |
gcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttagaggaaccatacccaaaaaggtctttagtctttcctctttaacaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10661220 |
gcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttagaggaaccatacccaaaaaggtctttagtctttcctctttaacaaa |
10661121 |
T |
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| Q |
215 |
cttactgaacttgtcaaaaaac |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
10661120 |
cttactgaacttgtcaaaaaac |
10661099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 7191979 - 7192200
Alignment:
| Q |
15 |
aataagttgtcaggagaggtaccatccattataggcaacctcagtcaattatatcttttgagtataagagataatatgttaggaggaaatattccttcaa |
114 |
Q |
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|||||||| || |||||| ||||| |||| ||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| |||| |
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| T |
7191979 |
aataagttttccggagagataccacccatcataggcaacctcagtcaattatatcatttgagtgtaggagataatatgttagaaggaaatattccgtcaa |
7192078 |
T |
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| Q |
115 |
gcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttagaggaaccatacccaaaaaggtctttagtctttcctctttaacaaa |
214 |
Q |
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| T |
7192079 |
gtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaggaaccatacccttagaagttttcagtctttcttcgttatcaaa |
7192178 |
T |
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| Q |
215 |
cttactgaacttgtcaaaaaac |
236 |
Q |
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||||||||||||||||| |||| |
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| T |
7192179 |
cttactgaacttgtcaagaaac |
7192200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 10653434 - 10653217
Alignment:
| Q |
15 |
aataagttgtcaggagaggtaccatccattataggcaacctcagtcaattatatcttttgagtataagagataatatgttaggaggaaatattccttcaa |
114 |
Q |
| |
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|||| |||||||||| | ||||| |||| ||||||||||||| ||| |||| | |||| ||| || ||||||||||||| | |||||| |||||||||| |
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| T |
10653434 |
aataggttgtcaggaatgataccacccatcataggcaacctcactcatttatttttttttagtgtaggagataatatgttggaaggaaacattccttcaa |
10653335 |
T |
|
| Q |
115 |
gcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttagaggaaccatacccaaaaaggtctttagtctttcctctttaacaaa |
214 |
Q |
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|||| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||| || ||||||||||| ||||||| |
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| T |
10653334 |
gcattggatattgccaaaagctacaatacctagacctttcacaaaacattctccgaggaaccatacccatagaggttttaagtctttcctccctaacaaa |
10653235 |
T |
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| Q |
215 |
cttactgaacttgtcaaa |
232 |
Q |
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| T |
10653234 |
catactgaatttgtcaaa |
10653217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 19607017 - 19606879
Alignment:
| Q |
98 |
aggaaatattccttcaagcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttagaggaaccatacccaaaaaggtctttagt |
197 |
Q |
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||||||||||||||||||||||||| | || |||||| |||||||| ||| ||||| ||||| | |||||| |||||||||||| | |||| ||| || |
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| T |
19607017 |
aggaaatattccttcaagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttcgt |
19606918 |
T |
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| Q |
198 |
ctttcctctttaacaaacttactgaacttgtcaaaaaac |
236 |
Q |
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|||||||||||| ||| |||||| | |||||||||||| |
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| T |
19606917 |
ctttcctctttatcaatattactggatttgtcaaaaaac |
19606879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 236
Target Start/End: Original strand, 10557964 - 10558115
Alignment:
| Q |
85 |
ataatatgttaggaggaaatattccttcaagcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttagaggaaccatacccaa |
184 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||| |||| || || |||| |||| |||||||| |||| | | ||||||||||||||||| |
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| T |
10557964 |
ataatatgttaggaggaaatattcccccaagcttcggaaattgtcacaatttacatcacctaaacctttcaaaaaataattttagaggaaccataccctt |
10558063 |
T |
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| Q |
185 |
aaaggtctttagtctttcctctttaacaaacttactgaacttgtcaaaaaac |
236 |
Q |
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|||| |||||| ||||||| ||| |||||| |||| |||||||| ||||| |
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| T |
10558064 |
ggaggtttttagtatttcctcattatcaaactcactggacttgtcacaaaac |
10558115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 10610767 - 10610823
Alignment:
| Q |
98 |
aggaaatattccttcaagcataggacattgccaaaagctacaatccctagacctttc |
154 |
Q |
| |
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||||||||||||| ||||||||||| |||| |||||| |||||| |||||| ||||| |
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| T |
10610767 |
aggaaatattcctccaagcataggaaattgtcaaaagttacaatacctagatctttc |
10610823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 10564173 - 10564216
Alignment:
| Q |
187 |
aggtctttagtctttcctctttaacaaacttactgaacttgtca |
230 |
Q |
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|||| ||||||||||| ||||||||||||||| ||||||||||| |
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| T |
10564173 |
aggtttttagtctttcttctttaacaaacttattgaacttgtca |
10564216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 10603798 - 10603941
Alignment:
| Q |
87 |
aatatgttaggaggaaatattccttcaagcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttagaggaaccatacccaaaa |
186 |
Q |
| |
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||||| |||| ||| | ||||||| ||| |||||| |||| |||||| |||||| ||||||| |||||||||||| |||||||| ||||||| | |
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| T |
10603798 |
aatatattagaagggagtattcctccaaatataggaaattgtcaaaagttacaatacctagacttttcacaaaacaaccttagagggtccatacctttag |
10603897 |
T |
|
| Q |
187 |
aggtctttagtctttcctctttaacaaacttactgaacttgtca |
230 |
Q |
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| | |||||| |||||||||| ||||| ||||| |||||||| |
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| T |
10603898 |
atatttttagtatttcctctttgacaaatttacttgacttgtca |
10603941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 10748167 - 10748084
Alignment:
| Q |
98 |
aggaaatattccttcaagcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttagaggaaccatacc |
181 |
Q |
| |
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||||||||||||| ||||||||| | |||| |||||| |||||| |||||| ||||| || || | ||||| ||||||||||| |
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| T |
10748167 |
aggaaatattcctccaagcatagaaaattgtcaaaagttacaatacctagatctttctcataataagcttagtggaaccatacc |
10748084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 31468330 - 31468213
Alignment:
| Q |
82 |
gagataatatgttaggaggaaatattccttcaagcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttagaggaaccatacc |
181 |
Q |
| |
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||||||| || |||| ||||||||||||| |||||||||| | ||||||||| || | | |||||||||| ||||||| |||||||||||||||||| |
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| T |
31468330 |
gagataacatattagaaggaaatattcctctaagcataggaaactgccaaaagttatatcacttagacctttcgcaaaacaatcttagaggaaccatacc |
31468231 |
T |
|
| Q |
182 |
caaaaaggtctttagtct |
199 |
Q |
| |
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| | |||| |||||||| |
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| T |
31468230 |
gatagaggtttttagtct |
31468213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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