View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3121_low_39 (Length: 235)
Name: NF3121_low_39
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_low_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 31719164 - 31719364
Alignment:
| Q |
18 |
aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttggaatccgtttcataccaaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31719164 |
aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttggaatccgtttcataccaaact |
31719263 |
T |
|
| Q |
118 |
tgttatcagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttcatatatgtattcttgacttttgtcaacaatttcaatggtgatct |
217 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31719264 |
tgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattcttgacttttgtcaacaatttcaatggtgatct |
31719363 |
T |
|
| Q |
218 |
t |
218 |
Q |
| |
|
| |
|
|
| T |
31719364 |
t |
31719364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 31721763 - 31721969
Alignment:
| Q |
18 |
aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttag------acacttgacgagcctttggaatccgtttcatac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31721763 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagacacttgacgagcctttggaatccgtttcatac |
31721862 |
T |
|
| Q |
112 |
caaacttgttatcagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttcatatatgtattcttgacttttgtcaacaatttcaatgg |
211 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31721863 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattcttgacttttgtcaacaatttcaatgg |
31721962 |
T |
|
| Q |
212 |
tgatctt |
218 |
Q |
| |
|
||||||| |
|
|
| T |
31721963 |
tgatctt |
31721969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 31711057 - 31711263
Alignment:
| Q |
18 |
aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttag------acacttgacgagcctttggaatccgtttcatac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31711057 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagacacttgacgagcctttggaatccgtttcatac |
31711156 |
T |
|
| Q |
112 |
caaacttgttatcagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttcatatatgtattcttgacttttgtcaacaatttcaatgg |
211 |
Q |
| |
|
|||||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31711157 |
caaacttgttatcagtattaaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattcttgacttttgtcaacaatttcaatgg |
31711256 |
T |
|
| Q |
212 |
tgatctt |
218 |
Q |
| |
|
||||||| |
|
|
| T |
31711257 |
tgatctt |
31711263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 31716237 - 31716411
Alignment:
| Q |
24 |
ttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttggaatccgtttcataccaaacttgttat |
123 |
Q |
| |
|
|||||||||| ||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
31716237 |
ttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataacctttagatacttgacgagcctttggaatccttttcacaccaaacttgttat |
31716336 |
T |
|
| Q |
124 |
cagtgttcaatgcccctcctacgttaccggctaacttcaacataaagttcatatatgtattcttgacttttgtca |
198 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||| ||||||||||||||| |||||||||| |||||||| |
|
|
| T |
31716337 |
cagtgttcaatgcccctcctacattaccagccaacttcagcataaagttcatataagtattcttgatttttgtca |
31716411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 31726155 - 31726049
Alignment:
| Q |
27 |
gaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttggaatccgtttcataccaaacttgttatcag |
126 |
Q |
| |
|
||||||||| |||| ||| || |||| |||||||||| | |||| | ||||| |||||| |||||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
31726155 |
gaaatctcatatatgagcttaacctccaacgcatcactggcataatccttagaaacttgaggagcctttggaatctgtttcccaccaaagatgttatcag |
31726056 |
T |
|
| Q |
127 |
tgttcaa |
133 |
Q |
| |
|
||||||| |
|
|
| T |
31726055 |
tgttcaa |
31726049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 31730222 - 31730169
Alignment:
| Q |
18 |
aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataa |
71 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
31730222 |
aaggccttagaaatctcaaatataagtctagcctcaaaagcatcacgagaataa |
31730169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University